Gnym013954.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021707.1:11329474-11340647[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.9 7.6e+02 2.1 0.3 1 23 536 557 536 557 0.73 2 11 0.39 59 5.5 3.8 1 23 594 615 594 615 0.92 3 11 6.7e-06 0.001 20.5 5.3 1 23 621 643 621 643 0.98 4 11 0.016 2.5 9.9 2.7 1 23 649 671 649 671 0.96 5 11 5.1e-06 0.00079 20.9 4.0 1 23 678 700 678 700 0.97 6 11 0.024 3.7 9.3 0.4 2 16 714 728 713 730 0.88 7 11 0.013 2.1 10.1 2.9 1 23 738 761 738 761 0.97 8 11 1.2 1.8e+02 4.0 0.1 2 12 770 780 770 782 0.90 9 11 0.00013 0.02 16.5 5.4 1 23 824 846 824 846 0.98 10 11 4e-05 0.0061 18.1 2.0 1 23 852 874 852 874 0.98 11 11 7.8e-06 0.0012 20.3 1.5 1 23 880 902 880 902 0.98
Sequence Information
- Coding Sequence
- aTGGCTTCCCGCAAAGGTGGATTTTTCTGTATATACCGCGGCTGTAACTCGAGAACAGGCGAAGGTCTAAGTTTTTTCTCAATTCCTAATGATCGTGTTAGAGCTGAAGTTTGGTTGAAGAATAGTAATAGGCAGGATCTGATTGAAAAAAACCTTGAGattctacacaaaaattataaattgtgcGAGCATCATTTTGAAGAAAAGCTTATTAGCAGAAGTGGAATAAGAAAAACTTTATTCCAGGATGCAAATCCTACTGTGTTTTCACATAGCAAACACAAGGACCAGTTTAGTTCAACAGAAGAAccatcaaaaaaaattataatacttGAAGGACGTGATGAGATTGTTGGTCTATGTGATATAGAAGATGACAAAAAAGAGGCAATGGTAGCACAGCATGCACTTGTAATTATGGCTAGAGGATTATATTCAAATTGGAAGCAACCTCTAGCTTATTTCTTTGTGCATACAAGTCTTGAAGCGGAAAAACTTGTTCACATTATAAAGAAATGCATTgcaaaaatgtttgaaataggTTTAAATGTACAATGTCTAGTATCTGATATGGggttaaattttgttaaattaagTAAATTACTTGGTGTTACATCTGATGAACCTAAATTTGATGTGGATGGTACAGAAGAAAGAACTGCTTCCACAACTAATACAGAAAATTCAGACACATTTAtcaagaattttgaaaaatctactATGAGAAAAAAGAAAGTGCACAAGTATTCATCTGATAGATCCGATATTCTACGGCGCTCAGGACGTAGTTCCAAAATTGCTAAATTAATCTCTCACCAAGATGACTTTacaaatatacatatattaaaaGATATCAAAACCCAAAATCCGAATATAGAAGTTGAATATGTAGATGTTAAAATGGAGCCTGAAGACAATACATTCGAAAATGATGAGCCATCTACTGTATTACACGAAAAACCAAGTGATGATCTAATACTAGTAGATTCTTCGGAATACAATGATTTATTCAAAGAAAATGAACTTTTAAAGCAACTGTTGACCAAAACAGGGATATCTTCTAATATAGAAAGTAGTGGAGAAAATAGTACAAGTATGGAGTTAAACCATTTGATAGATCTTACAGATATTCATAGGATTTGTAGAGTGTGTCTAAAAATATCGGATAGTTTGATATCAATGGACGAAAAgttgatatttgaaaataaaaatatctttgtAATGACTGTTCTAGAATCTATTCAATCTATTGTTGGTGATAAGGAGGTCGTTGATGATAATTTTCCACGCCAAATATGTCCGCAATGTCATAATCATTTGAAATTATTCGTAACTTTCAAATATACATTCAACAAAGCTTCATCTATCTTACATTACGTTAATGGACCATTGAAAAATATCGACAAACATCATATGTCGAACTCTGCATCAAAGGACCATGATTAcactaaacaaaatattttagagaCTGAAGCTCGTTGTAAAGTAGAATCAGAAGATATTGATATTAGTAAGGAAAGTGTTGATATTTTACAAGACAAGACTGAAGATTCACAAAAACTTTATCCATCTGAAATTGGAACTAAAAAAGAGAAGATGAAACTACACACTTGTCCAATATGTTGGATTAAAGTATCGATGTCCAAACTCATACCACACGTTAAATCTCACAAgactttggaaaaatatttaaatattccaAAAGTATCACCGAAAACACGATTTTACGTACCTGCACGCGACGTCAAAGGTCTACTGAGTGGGGAAAGTGAGAAATTGCACAAATGTCCCATTTGCAACTACGAATTTGAAGCTTCCGAATATATGTTGCACGTCCATCATCACTTGACTCACGATCAATTCAAATGCGAAAAATGTCATCGTACTTTCAAAAAGAAAAGTTATTTGTTGTCTCACATGCTGATACACAGTAAAAATTTTCCTTTTagATGCGAGAAATGTGATAAAGGTTTTGTGATCAAATCTAACTACGATTGTCATCTGTTAACCCACGAAGGAGGTGAACTACCTCATAAATGTGTCGAATGCAGCAAAAGTTTTTCAAATCCCAACCATCTTTCTCGTCACATGACTATCCATACCGAAAATCGTACTTATTCAACTAAGTACAGATATAAAAGGTGTAAATATTGCGGACAAGGATTTTCACAACAAGAACAAGTCGAACACGTTTGTCATCAATGGGGAGTATATAAATGCAAATATTGTTATAAAGTATTCTTGAATGCAAGAACGCGTCAATTACACATACGTAGCAAACattttaaaggaaataaaaatccCGGTTATTGTCCCATCTGTAATCTCAagtttaaaaatatcatttaccaTAAAGCATCGAAACATCCAAATGATAAAATGAAAGCTTTGTGTACGGCGTGTGGATTGTACGTTTCCAATATTTACACgCACATGATGAAACACAGAAAAGTTCCCGCAACGAAATCTTACCAATGTCACACttgctcaaaattattttcGTATAGAACCACCTTAAAAAAGCACATGTTGTTGCATACCGGATTAAAACCTTACATATGCAGTTACTGTGGAAAAGCTTTCAATTGTAGTTATAATCTAAAAGTACACGAAAGAATTCACGTCGGCGATAGATGTCACGTATGTCCGATTTGCGATAAAggatttttggaaaaatcttATCTCAACAAACATATGAAAACGCACAAAGAAGTCGATGTAGATGCAAGCGAAATGGACGATTCGAGAATCCAAATAGATCATGAGGATTTGTAG
- Protein Sequence
- MASRKGGFFCIYRGCNSRTGEGLSFFSIPNDRVRAEVWLKNSNRQDLIEKNLEILHKNYKLCEHHFEEKLISRSGIRKTLFQDANPTVFSHSKHKDQFSSTEEPSKKIIILEGRDEIVGLCDIEDDKKEAMVAQHALVIMARGLYSNWKQPLAYFFVHTSLEAEKLVHIIKKCIAKMFEIGLNVQCLVSDMGLNFVKLSKLLGVTSDEPKFDVDGTEERTASTTNTENSDTFIKNFEKSTMRKKKVHKYSSDRSDILRRSGRSSKIAKLISHQDDFTNIHILKDIKTQNPNIEVEYVDVKMEPEDNTFENDEPSTVLHEKPSDDLILVDSSEYNDLFKENELLKQLLTKTGISSNIESSGENSTSMELNHLIDLTDIHRICRVCLKISDSLISMDEKLIFENKNIFVMTVLESIQSIVGDKEVVDDNFPRQICPQCHNHLKLFVTFKYTFNKASSILHYVNGPLKNIDKHHMSNSASKDHDYTKQNILETEARCKVESEDIDISKESVDILQDKTEDSQKLYPSEIGTKKEKMKLHTCPICWIKVSMSKLIPHVKSHKTLEKYLNIPKVSPKTRFYVPARDVKGLLSGESEKLHKCPICNYEFEASEYMLHVHHHLTHDQFKCEKCHRTFKKKSYLLSHMLIHSKNFPFRCEKCDKGFVIKSNYDCHLLTHEGGELPHKCVECSKSFSNPNHLSRHMTIHTENRTYSTKYRYKRCKYCGQGFSQQEQVEHVCHQWGVYKCKYCYKVFLNARTRQLHIRSKHFKGNKNPGYCPICNLKFKNIIYHKASKHPNDKMKALCTACGLYVSNIYTHMMKHRKVPATKSYQCHTCSKLFSYRTTLKKHMLLHTGLKPYICSYCGKAFNCSYNLKVHERIHVGDRCHVCPICDKGFLEKSYLNKHMKTHKEVDVDASEMDDSRIQIDHEDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00735691;
- 90% Identity
- iTF_00735691;
- 80% Identity
- iTF_00735691;