Gnym028694.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021714.1:9486632-9492621[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.99 1.5e+02 4.2 0.3 2 23 78 99 77 99 0.94 2 16 0.018 2.8 9.7 3.3 1 23 105 127 105 127 0.98 3 16 0.0038 0.59 11.8 2.2 1 23 133 155 133 155 0.90 4 16 0.00025 0.038 15.6 3.7 1 23 161 184 161 184 0.98 5 16 0.00015 0.023 16.3 3.5 1 23 196 219 196 219 0.94 6 16 0.0089 1.4 10.7 0.9 3 23 230 250 229 250 0.98 7 16 1.9e-05 0.003 19.1 3.8 1 23 256 278 256 278 0.96 8 16 6.6e-07 0.0001 23.7 0.7 1 23 284 306 284 306 0.98 9 16 0.24 37 6.2 0.3 1 21 312 332 312 333 0.90 10 16 0.0064 0.99 11.1 0.2 2 23 373 394 372 394 0.96 11 16 0.18 27 6.6 1.2 1 21 429 449 429 451 0.85 12 16 0.00014 0.022 16.3 3.6 1 23 457 480 457 480 0.97 13 16 6.6e-05 0.01 17.4 2.2 1 23 492 515 492 515 0.95 14 16 0.0014 0.21 13.2 1.3 3 23 524 544 523 544 0.99 15 16 1.8e-06 0.00028 22.3 2.7 1 23 550 572 550 572 0.96 16 16 6.5e-06 0.001 20.6 1.4 1 23 578 600 578 600 0.98
Sequence Information
- Coding Sequence
- ATGGATATCAACCTAAAAACGAGAAAATCaaaaggaaagaaaataaaaaatgaaaacgaCGACGAATACCAAGAAGAAGAAGGGGAGGAGAGCGATGAAAAGTTTTCCAAAacgaaaaaattaagaaaaaagagaataaaaaaaGAGGACCTTAAAGAAAACGAAAAGGTAAAAAAAATCAGACGGAAAAGAAGCGACATATCACCGCAAGTAGAACTGGACGAACCCATCCAATGCGACCTTTGTAGCGACACGTACAAAAACAACGTTGCATTTTCTCTACATTCCATCCGTCATAGCGACGACGGAAAATATTCTTGCCATATCTGCAACTTCAAAAGCGCTTCAAAATATCACATAGAAATGCACGTTAGAGCACACGAAGGTACCACCAGCTACAAATGCGAGATTTGTAACAAAGCATTCACCGTTAGTACCCACGCTCTGGAACACAAGTACTTCCACACGGGAGAAAAACCCTTTCAATGCGAAATATGCGGTAAACACTTTATGTTTTCCAGATTTTTAGCTTCCCACAAGCGAACGCAGCACTGGGAAATCATAACCGGTACGCCTTTAATAAAATACGATTGTACGATGTGCAACAAACATTACACATCCTCTAGTGGTCTTAAAAGGCATAATTTAAGAAACCACAACTATGAGGGTATAGATACTTCCGTTCTTTGTGATATTTGCGGTAAGAAAATCTCCAGTAATGAAAAATTGAAGTTTCATCGTAGAGTACATACGGGATACCGTCCTCATGCTTGTGAAGTATGCGGTAAATGTTTCTCTACCAAAGAACAGAAAAAGGAACATCTAAGAGTTCATACTGGGGAAAAACCGtatatttgtaaatattgtGGAAAAGGGTTCACGCAAAGGTCGCCTTTAAAGATACACGAGAGGTCGCATACTGGTGAGGCTCCTTATATTTGTATTCTTTGTACGAGGGGTTTCGTTTCCAAAAGTGCCATGGATAGTCACATGAAGCACTGCAAGAACCCTGACCGaaagaaaaaacgaaaaaaaacaaaaactacaagaaaatccaaatataaaaaaaaatctcctGACGACCATCCGCCTCCGTTGAAATTAGAACAGCCAATTAAGTGCGAAGAATGCGAGTTAACGTTCGATAACAATATAGATTTCGCATTACATTCAAAATCACACGATCAAAACGGCAAATACACTTGCCATCTATGCATAAATTTCAGAAACGCTTCCAAGTACCAAATAGAGATGCACGTCAGAGCCCACGAAGGTACTACAAAGTACAAATGCGAAATTTGTAATCAAGGATTTGCTATTAGTACGCACGCTCTGGAACACAAGTATTTTCATACCGGAGAAAAACCATTTCAATGTGAAATATGCGGAAAACATTTCATGTATTCCTGGTTTTTATCCAGACACAGAAAATCCACCCATTACGAAATTCTCACCGGTAATCCTCTGGTTAAATACGACTGCTCTATTTGTAACAAACACTACGCAACTGCCTCTAGTTTAAGTAGACACAAACTAAGTAAACACAAAAAGATTGATGGATCCGTTCTTTGCGATATTTGCGGAAAAAGATTATCTAGTAGGGAGAAGTTAAAATTCCACCTTCGAACACACACAGGATACAAACCTCACGCATGTCACTATTGCCctaaaagtttttcaaaaaaagatCAACTCGTTGAACACGTCAGGGTACATACAGGAGAAAAACCGTATATTTGCAAATACTGTGGCAGAGGATTTACTCAAAGAACTCCATTGAAAACTCACGAAAAAACCCACAATAGAGAAGAACCCACAGCGTGTGTTACATGTGGGGTTACCGGAGACTGTCCTCATTTCACTAAAAAACCACCTCACTGTAAAAGTATCACACCTTGTGTAATTTGTGGTGAACTAGGTCCTTGTCCTCACTTGCAAGGTTCTAAAGACGAGAGTGTCGCGTGCCCTATTTGTGGATCTCAAAATATTTGCGAGCATATTCTTAAGATGAGTATGATGACACCGACGCGAGAGGACGTGTCATGTTATATTTGTGGAGACTTGAGTTATTGTACACATATTCCTAGAATTCCTTTTAAAACAACGAAAAATGAAGAGATGATTTGTAATGTTTGCGGGAAGATTGGAACTTGTGTACATTTGCAGAATATGATGGCGTTTCCTTTTCCTTAA
- Protein Sequence
- MDINLKTRKSKGKKIKNENDDEYQEEEGEESDEKFSKTKKLRKKRIKKEDLKENEKVKKIRRKRSDISPQVELDEPIQCDLCSDTYKNNVAFSLHSIRHSDDGKYSCHICNFKSASKYHIEMHVRAHEGTTSYKCEICNKAFTVSTHALEHKYFHTGEKPFQCEICGKHFMFSRFLASHKRTQHWEIITGTPLIKYDCTMCNKHYTSSSGLKRHNLRNHNYEGIDTSVLCDICGKKISSNEKLKFHRRVHTGYRPHACEVCGKCFSTKEQKKEHLRVHTGEKPYICKYCGKGFTQRSPLKIHERSHTGEAPYICILCTRGFVSKSAMDSHMKHCKNPDRKKKRKKTKTTRKSKYKKKSPDDHPPPLKLEQPIKCEECELTFDNNIDFALHSKSHDQNGKYTCHLCINFRNASKYQIEMHVRAHEGTTKYKCEICNQGFAISTHALEHKYFHTGEKPFQCEICGKHFMYSWFLSRHRKSTHYEILTGNPLVKYDCSICNKHYATASSLSRHKLSKHKKIDGSVLCDICGKRLSSREKLKFHLRTHTGYKPHACHYCPKSFSKKDQLVEHVRVHTGEKPYICKYCGRGFTQRTPLKTHEKTHNREEPTACVTCGVTGDCPHFTKKPPHCKSITPCVICGELGPCPHLQGSKDESVACPICGSQNICEHILKMSMMTPTREDVSCYICGDLSYCTHIPRIPFKTTKNEEMICNVCGKIGTCVHLQNMMAFPFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -