Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: Clamp
Assembly: GCA_963978555.1
Location: OZ021715.1:6171114-6174215[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.5e-05 0.007 17.9 4.8 1 23 95 117 95 118 0.96

2 8 1.7e-05 0.0026 19.2 2.1 1 23 155 178 155 178 0.93

3 8 7.9e-05 0.012 17.1 3.0 1 23 316 338 316 338 0.97

4 8 4.7e-06 0.00072 21.0 0.2 1 23 344 366 344 366 0.98

5 8 1.3e-06 0.0002 22.7 1.5 1 23 372 394 372 394 0.99

6 8 2.7e-07 4.2e-05 24.9 1.2 1 23 400 422 400 422 0.98

7 8 1.3e-05 0.002 19.6 3.3 1 23 428 450 428 450 0.98

8 8 1.1e-05 0.0017 19.9 0.6 1 23 456 478 456 478 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.5e-05	0.007	17.9	4.8	1	23	95	117	95	118	0.96
2	8	1.7e-05	0.0026	19.2	2.1	1	23	155	178	155	178	0.93
3	8	7.9e-05	0.012	17.1	3.0	1	23	316	338	316	338	0.97
4	8	4.7e-06	0.00072	21.0	0.2	1	23	344	366	344	366	0.98
5	8	1.3e-06	0.0002	22.7	1.5	1	23	372	394	372	394	0.99
6	8	2.7e-07	4.2e-05	24.9	1.2	1	23	400	422	400	422	0.98
7	8	1.3e-05	0.002	19.6	3.3	1	23	428	450	428	450	0.98
8	8	1.1e-05	0.0017	19.9	0.6	1	23	456	478	456	478	0.98

Sequence Information

Coding Sequence: ATGATGTTCGATCCTAATACCATAACAACGCAACAATCCCAAATACAGTATCAGCAACCACAACAGAATGACAAGGAAAAAGAGCAAGGACAAAAGGACACGTTTGCTCCTTTCTGTTATGCAAACGTCAATATGATACACAAAATAGCTCCTAATACCACACAAACTCATAATTCTACTGTTAATATGTCGCAACTTACAGATGACAAGTGCTACATAACTCAACCTTTTAGCTATAATTACACACTTGTCAATCAAAATTTGTTGACTCAAAATATAACATTCAAATGTGATGTATGTGGATTGATGTTTGCGCATCTTTCTTTATTGAACCACCATAAGAAAGTTCATCACGGACAAAATGATCAAACCCAAGGACAACAACAACAGATAACAGTACAgGTTCAGCAACCACCACAACAGCCAACTCAGATCCAAATAGTATCAGCTGATCGTATAAGGTTTTCCTGTGAGGAATGTGGTCTAACGTTCAACACCCAGCATGACTTGAAAACGCACAAAATTCAGTCACATCAATCACAAACTCAGCAACAGCATTTTCAGGTTCAAACTCAGCCTCAACAAAATActctcaaaataaaaaattgtgaatCATGCGGGGCGCCTCTTCCCCAAGATAACAATAAAAAGAGGGCAGTTATGAAAGTCAAGTGTGAAAACTGTCTAAGCGCTGAAGCGATACAGCCACAAATATTTGTTGTAGCTGCAGCACCTGATACAGCTGTTAAGTATGAAGAAAGTACCGGAACACAAACACAGACTCAAGCTTTAGGAACTCAAAATACGATACCGATAGGAATAAAAAATAACCACCCAGTTAAAAGAAGAGGAGTAGCTAGCGTTACCAAATGTACTAAATGTAACGGTAGCGGTATAATTTTCATTGGAGGctcaaaaaatcaacaaaataatGTAGACAAACCTTTCCACTGCAACATTTGTAATGGTTCATTTAGCAGATATTCATCACTTTGGTCTCACAAGCGTCTGCATACAGGCGAAAAGaattttaaatgtaatatttgTGGCTTAGCTTTTGCGAAAGCTGCATATCTGAAAAATCACTCAAGGATACACACAGGAGAAAAACCTTACAGgTGTAATGTGTGTGGTATGCAGTTTTCTCAATCACCACATCTTAAAAACCACGAGAGGATACACTCGGGAGAAAGGCCATATATTTGTGAAGTGTGCGACAAATCTTTCGCTAGACATTCTACTCTGTGGAACCATAGGCGGATACACACCGGTGAAAAACCTTACAGGTGCGATATTTGTGGTTCTTGTTTCAACCAAGCGACACATTTGAAGAACCATGCCAAGGTCCATTCGGGAGAGAAACCTTTCAAATGTGATATTTGCTCTGTAGGATTCTCAGACAGGTTTGCTCTTAAACGACACCGAAACATCCACGAGAAATATGGTAGAACGAAACCTCAAATAACGTCATCGAACAATGACGATGTTCAAAATAACACTTCCTCCGATTCGTTAACTTCCTCGGCTAACCTCGCTAACGTAGTTCAGGAAGCCGACCACGAAGAAATCGTAGAAACCAAATACGAACAGAAATTCGAAAACGTCGATGGTAGCGACATGGAAGAAGATATGACGGATATATCAGAGTTGCAAGTTCAATTGCAATAA
Protein Sequence: MMFDPNTITTQQSQIQYQQPQQNDKEKEQGQKDTFAPFCYANVNMIHKIAPNTTQTHNSTVNMSQLTDDKCYITQPFSYNYTLVNQNLLTQNITFKCDVCGLMFAHLSLLNHHKKVHHGQNDQTQGQQQQITVQVQQPPQQPTQIQIVSADRIRFSCEECGLTFNTQHDLKTHKIQSHQSQTQQQHFQVQTQPQQNTLKIKNCESCGAPLPQDNNKKRAVMKVKCENCLSAEAIQPQIFVVAAAPDTAVKYEESTGTQTQTQALGTQNTIPIGIKNNHPVKRRGVASVTKCTKCNGSGIIFIGGSKNQQNNVDKPFHCNICNGSFSRYSSLWSHKRLHTGEKNFKCNICGLAFAKAAYLKNHSRIHTGEKPYRCNVCGMQFSQSPHLKNHERIHSGERPYICEVCDKSFARHSTLWNHRRIHTGEKPYRCDICGSCFNQATHLKNHAKVHSGEKPFKCDICSVGFSDRFALKRHRNIHEKYGRTKPQITSSNNDDVQNNTSSDSLTSSANLANVVQEADHEEIVETKYEQKFENVDGSDMEEDMTDISELQVQLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310805;
90% Identity: iTF_00057075;
80% Identity: -