Gnym009559.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- salm
- Assembly
- GCA_963978555.1
- Location
- OZ021705.1:26534157-26541658[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.7e-06 0.00072 21.0 0.9 1 23 321 343 321 343 0.98 2 10 6.4e-06 0.00099 20.6 1.9 1 23 349 371 349 371 0.98 3 10 0.058 9 8.1 3.8 2 23 681 702 680 702 0.98 4 10 5.7e-08 8.8e-06 27.0 0.6 1 23 708 730 708 730 0.97 5 10 5.6e-05 0.0087 17.6 2.6 1 23 740 762 740 762 0.98 6 10 0.0085 1.3 10.7 2.4 2 23 1028 1049 1027 1049 0.97 7 10 0.14 21 6.9 0.9 1 14 1055 1068 1055 1069 0.93 8 10 5.1 7.8e+02 2.0 0.3 11 23 1115 1127 1113 1127 0.87 9 10 1.3e-06 0.0002 22.8 4.0 3 23 1226 1246 1224 1246 0.96 10 10 1.9e-07 2.9e-05 25.4 0.9 1 23 1252 1274 1252 1274 0.98
Sequence Information
- Coding Sequence
- ATGTGTCAACGGTGTCAAGAACAATTTACGGAAGTACAAGAATATTTAACACATAAAGAAGAATGCGACAAAAAAGCAATTAAACACGACGATCCAGCTCATTCCGATCCAGAAGACATGGTAGTATCAGAAGACGACGACGAAGACGAAGAAACGGGCAATAAAGGCATAGAAAAAATACGCAGAAATCGACAGGATGCTGCAAACAATAACAGCGTAGACGACGAACACTCACCGGATGCGGAAAGTCAAAGATTAGGTTTTCCGTTTCCTCTATCGGCAGCACCAGGTCATGTGACGTTGGAAGCTTTACAAAACACCAAAGTTGCCGTAGCGCAGTTCGCCGCTACGGCTTTGGCTAATAACGCTGATAATGAAGCAGCTTTACAAGAACTAGCCGTGCTGCAGTCAACTTTATTCACCTTACAACACCAACAAGTATTACAATTACAACTTATCAATCAACTTCAACATCAACTTCAAATAGATCGAACCaaaggagacgaagaagaaCCGACGGCTATTTCGCCTACGACATCTGAAAATGAAGTGGAGCACACGCAAGTCGAATCGCCTACGCCGCCTCCAGCTCTACCTCTATCTCGTGAGCCTACCCCAGCTTCTCTACCTCCACCGATGCCTCCTAACGTGCAGCCTTCGCCGGCCGCTAAACCTCCATCGCCGGAAGATTCGGTTCCTTCAACGATGGCTATGCATATTCAACCTCCGATGTGTTCTATATCTTCCTCGTTGGCATCCACGATTATAACGCATAACGACGAACAAATTTTAGAAGAACCCAATACGTTGGAGATGCTTCAAAAACGAGCGCAAGAAGTTTTAGATAACGCTAGTCAAGGTTTGCTAGCCACAAATTTAGCCGACGAATTGGCTTTTAGAAGAAGCAAAGGATCTATGTCACCGTACGAATCGAAAGGGAGAAACGAACCGTTCTTTAAGCACCGTTGTAGATATTGCGGTAAAGTTTTCGGTTCCGATTCAGCCCTTCAAATACATATCCGCTCTCACACAGGCGAACGTCCTTACAAATGCAACGTTTGCGGGAGTCGTTTCACTACCAAAGGCAATTTGAAAGTGCATTTTCAAAGACATAGTCAAAAGTTTCCGCATATCAAAATGAATCCTAATCCAGTACCCGAACATCTCGATAAATATCATCCACCTTTATTAGCACAGCTTGGTCAACAGTCTTCTTTGTCCCCAGGAGGCCCACCGCATCATCCTCATTTAGGATTTCCTACATCAGGTCCTCATTTTCCCCCGACTTCTATGCCGCTGTTTAGGCCTCAAGTTCCACCTCCTAGCGATATTATTAGCAACCGACTTCCACCGTCGCCTCATAGATTACTAGAACATCAACCAAGATTATTTCCACCACATCCCTTATTTTTAAAACGGGAAGAGCAAGAAACCCCAGCGGATTTAAGTAAACCTCCACGATCTCCATCGCCGAATGAAGAAAAAATGCATTCGTCATCAGAACTGGAAGAAAAAAGAGAAATCGAACCAATAGAAGATAAACTTAGTACTCCACAAATTACACCGAAACAAGAGACAAATCTAACAGATAATGAGCACGAAAACGAACCAGAAAGATACGCTTCTTCTCTGCCTTACGACGAATGTAGTAACAGCAGTAAATATTCCAACGAGGATTTAATAGAGCCGCGAAGTGAACCGAACGAGAATATTCAAGACGAACCGGAAAATCTATCCAGCAGACACGATTCCATCACTGGTCCTTTAAGCATATCAACCGGACAAAGATTACCGGCAAATTTTTCATTCGGTGTTACAAGCTCGCCGCCTAGCAGTACTTCTTCGGGAAGCTTGGGACATTTTCCGATCAACTATTTACCGGATATCACTAAAGATCCTTCTATATACACCAATTTGCTACCCAGACCGGGTAGTAACGATAACTCTTGGGAAAGTTTAATAGAAGTTACTAAAACTTCAGAAACTAGTAAATTACAACAACTAGTAGATAATATAGAACATAAATTATCAGATCCTAATCAGTGCGTGATTTGCCATCGGGTATTATCCTGCAAAAGCGCGCTTCAGATGCACTACAGGACTCACACGGGCGAACGACCTTTCAGGTGCAAAATTTGTGGACGAGCTTTCACGACGAAAGGTAATCTCAAGACTCACATGGGAGTGCATCGCGCGAAACCACCCATGAGAGTCTTGCATCAATGTCCGGTGTGTCACAAGAAATTCACGAACGCTTTAGTGCTTCAACAACATATCCGTTTACACACCGGAGAGCCGACCGATCTCACTCCCGAACAAATCCAAGCAGCTGAAATTAAAGACTTTCCTTCACCCGGTGGCTTCCCAGGGCTACCAAATTCCATACATCCATTCCTGAATCAAGGTTTCGCCGCACCAGGTCTATCTCCACTAGGTAATATGCCCTTAAATATGCGATGCGATCGCGATATAAAATCAGAGCACGGCAGCATGGACGAAGAcgatgatgatgacgatgatgatgcGATGAGTACTTGCGATAACCCTCAGATGCCGCCGTTTTCTTCGTCGCCTTCGGACGTGCAGAATATCGGAATACCGGTTAGTACTACAGCGTCACAGTTTTCTGGAAGCGGGCTTAGTTGTTCGGCGGAAGATTTGTGTTCTAATAGAACCGCTACACCGCCCCCACTTCAAAACGGCGACAAATCTCCTAGTCGATCTGTGGCTACTAGTCCTGGGAGTGCGGAACTACGATCGTCTCCTAATAATACTCCCGTCCAGATTCCACGACCTCCGTCGTCTCAACAAGCTAGTAGTCCGGCACCTTCTGATAACTCTATGGGTGCTCTAGATTTAACACCGAGGAGTCAACCTAATATTACGAGTCCTGGACCTTTGACACCTAGTGGAGGAGTTCCGTCGATGTTTCCTTCATTTGGACTTTTACCTTCTGGCGGCCAATCGCCGTTGATGACATCGGCTTTATCATCACTCACCTCTTCTGTTTTAACGTCGACTTCGTTTAGTCCTTTAAGGTTAGCAGTTGGACCCATCGGAGCTTTAGGACGTGGGAATACAACCTGTAACTTGTGCTTCAAGACGTTCGCCTGCAATTCTGCCCTTGAAATCCACTACAGAAGCCATACCAAAGAAAGACCCTTTAAATGCACAGTTTGTGAAAGAGGATTCTCCACAAAGGATGGTTGTCAATGTACGCAGAGGCGTATCCAGGAAGAAGTAGAACACTTGAGAGCGCAAAATCAAAAATCGTCACTGTTCAACTCCATTCCTTCAGTATTTTGTTTACCGATGACGCCTGGATACGCCTCATCAAGGACTAAAAAGGCGGGTAATATGAAACAGCACATGTTGACACATAAAATTCGGGATATGCCACCACATATGTTCGACAACAACAAACCGCTTAGTATGAGTAGCGATGACAGTACTCCTCTACCTCCCAGTCTGCCTAAAATGGATAACCAGCTCAGTGATAACGAACAACCTCAAACGCCTGCACCACCACCACCTCCTCAAGTCATTCAACCTCCGCAGGCTCCTCTCCAACCGGAAAAACACGAATTGGAGTCGCAACAAATCAAAAGAGAACCTACAGAGACTGAACTACCTTTGCCCAAACGCCCTCCCAGCTTACAATCGAGTAAGCATTTGTGCCACGTGTGCAATAAGAACTTCTCGTCGAGTTCAGCCCTGCAGATACACATGAGGACCCATACGGGAGACAAACCCTTCAGATGTACAGTTTGCCAGAAGGCCTTCACCACCAAGGGTAATCTCAAGGTTCACATGGGCACGCATATGTGGAGCAACGGAGCGTCCCGAAGAGGGCGACGCATGTCCCTCGACCTACCTCCCATCCCCATGACTCCCAAGGATTCCGAATTTCTTCAGCGGAGACCAGATCTTTTCTACCCGTACCTACCGGCTCCATTCCTTAACGGGATGCAACAAAAGTTGAATGAAATATCCCTGGTCCAGAATAATCATAATGGACTGACAGGAGCTGGAAAATATAGCGGACTCCTTGGGTTCGGTTATCCGCCACCGGAAGCTATACGATCTCAGGCGAGTTCTCCCGAACGTTCCGAGAGACCGCCCAGCCACGAACCCGATACTAGAGGACTCTGGGATCTTCATTTCGAAAGGAAAAGTGCAACAGACACACCCAGAGAAGATCTTCTACCACCGACAGCTAACAGAGAGGGGTTGGCTGCCTGA
- Protein Sequence
- MCQRCQEQFTEVQEYLTHKEECDKKAIKHDDPAHSDPEDMVVSEDDDEDEETGNKGIEKIRRNRQDAANNNSVDDEHSPDAESQRLGFPFPLSAAPGHVTLEALQNTKVAVAQFAATALANNADNEAALQELAVLQSTLFTLQHQQVLQLQLINQLQHQLQIDRTKGDEEEPTAISPTTSENEVEHTQVESPTPPPALPLSREPTPASLPPPMPPNVQPSPAAKPPSPEDSVPSTMAMHIQPPMCSISSSLASTIITHNDEQILEEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRRSKGSMSPYESKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSQKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQSSLSPGGPPHHPHLGFPTSGPHFPPTSMPLFRPQVPPPSDIISNRLPPSPHRLLEHQPRLFPPHPLFLKREEQETPADLSKPPRSPSPNEEKMHSSSELEEKREIEPIEDKLSTPQITPKQETNLTDNEHENEPERYASSLPYDECSNSSKYSNEDLIEPRSEPNENIQDEPENLSSRHDSITGPLSISTGQRLPANFSFGVTSSPPSSTSSGSLGHFPINYLPDITKDPSIYTNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEIKDFPSPGGFPGLPNSIHPFLNQGFAAPGLSPLGNMPLNMRCDRDIKSEHGSMDEDDDDDDDDAMSTCDNPQMPPFSSSPSDVQNIGIPVSTTASQFSGSGLSCSAEDLCSNRTATPPPLQNGDKSPSRSVATSPGSAELRSSPNNTPVQIPRPPSSQQASSPAPSDNSMGALDLTPRSQPNITSPGPLTPSGGVPSMFPSFGLLPSGGQSPLMTSALSSLTSSVLTSTSFSPLRLAVGPIGALGRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCTVCERGFSTKDGCQCTQRRIQEEVEHLRAQNQKSSLFNSIPSVFCLPMTPGYASSRTKKAGNMKQHMLTHKIRDMPPHMFDNNKPLSMSSDDSTPLPPSLPKMDNQLSDNEQPQTPAPPPPPQVIQPPQAPLQPEKHELESQQIKREPTETELPLPKRPPSLQSSKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISLVQNNHNGLTGAGKYSGLLGFGYPPPEAIRSQASSPERSERPPSHEPDTRGLWDLHFERKSATDTPREDLLPPTANREGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01047711;
- 90% Identity
- iTF_00911333;
- 80% Identity
- -