Gnym028687.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- Prdm2
- Assembly
- GCA_963978555.1
- Location
- OZ021714.1:9452646-9455310[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.4e-05 0.0052 18.3 3.7 2 23 19 40 18 40 0.96 2 12 1.8e-05 0.0028 19.2 3.4 1 23 46 68 46 68 0.97 3 12 0.0017 0.27 12.9 0.8 2 23 75 96 74 96 0.97 4 12 0.0034 0.52 12.0 1.5 2 22 103 123 103 125 0.90 5 12 6.1e-06 0.00095 20.6 1.5 1 23 130 152 130 152 0.97 6 12 0.00041 0.064 14.9 0.1 1 23 160 183 160 183 0.91 7 12 0.00023 0.036 15.7 4.3 1 23 189 211 189 211 0.98 8 12 3.4e-06 0.00052 21.5 4.0 1 23 217 239 217 239 0.98 9 12 0.0042 0.64 11.7 0.3 1 20 277 296 277 299 0.93 10 12 0.049 7.5 8.4 0.7 1 23 305 328 305 328 0.97 11 12 7.1e-05 0.011 17.3 0.1 1 23 333 356 333 356 0.96 12 12 2.8e-05 0.0044 18.5 0.3 2 23 383 405 382 405 0.97
Sequence Information
- Coding Sequence
- atgaaaaaaaataacttttctaAAAGAAGCTACGTAAAATCAAAAGAACTCTTAACCTGCGATATATGTAAAAAAACTTTCAAACAACACAGTCGACTCAAACTCCATCTACTATCCCACAGTACAAACCGACCGTTCTCCTGTCATTTGTGCGACAAAACTTTTAAACGTAAAAACGACGTTTCTGTACATTTGAAACTTCACGGAAATAAAACAACGTTAAAATGTGATATTTGCTCCAAAAAACTCGGCTCCAAAAGCGCTTTCGCGATACACAAAAAACGCCATCTCAAAGAATACGTAGCCAAGTGCGAATTTTGCAAACAAGGCTTCGTCACCAAACAAGAATACAACAACCACATGGGTTTCAAACACGGCACCAGCAGTCACGTCTGCAATATTTGCGGCACCGCTTGCTACGACAAATCAGCTTTAACCAGCCACATGGCAAGACACGATGACAGTTACAATCACAAATTCGTTTGTGAAACTTGCGGTAAAAAGTTGTACTCGAAAGTAACTTTACAAGAGCATATAGTAGCCATTCACCAAGGACTAAAACCGCATAAATGTGACCAATGCAACCAGTCTTTTGCTAATAGGTTAACGTTGAGGCTGCATAAAAGGAGACATACTGGTGAAAAGCCTTATAGCTGCTCTTATTGTTTGAAATCTTTTACGCAGAGTCATAGTTTGAAAATTCATCTTAGACTGCACACCGGAGAAAAACCGGAGATTTGTAATATATGTGGAAATAGGAAAAAAAAGACGCCTTTGAACAATAACGTAATAGAAGACGAAGAAGAAGTCCAGTTTGTCGAAAAAGAATATATGTGTATGCAATGcgggaaatatttcatgtacaaATGGCAGCTTGTCGATCATCTTCCCGTACACAGCAGCGACAGACCGTTCAAGTGCGATATTTGTGACAGCTGGTTCAAACGCGTCAAAGACGTTACCATACATAAAAAACGAGTTCACGTACGACCACATTACGTTTGTGGAATATGCCAGAAAGTTTTAAGTAGAAAGTCTAGCTTAGATGAACATGTTATCAAGgTTCATAATCAAATTAACGAAGGCTCAGCTTATCCGAAAAATTTATTGCACAAAGATCTTCTGAAGAAAGATATGATAAAtatgaaatgtgaaatttgcgGTAGGGGATTCATTACCAAAAGAGTGTATAGAATTCATATGAAATCTGCTCATAATGTTATTATTTTGGATGAATAG
- Protein Sequence
- MKKNNFSKRSYVKSKELLTCDICKKTFKQHSRLKLHLLSHSTNRPFSCHLCDKTFKRKNDVSVHLKLHGNKTTLKCDICSKKLGSKSAFAIHKKRHLKEYVAKCEFCKQGFVTKQEYNNHMGFKHGTSSHVCNICGTACYDKSALTSHMARHDDSYNHKFVCETCGKKLYSKVTLQEHIVAIHQGLKPHKCDQCNQSFANRLTLRLHKRRHTGEKPYSCSYCLKSFTQSHSLKIHLRLHTGEKPEICNICGNRKKKTPLNNNVIEDEEEVQFVEKEYMCMQCGKYFMYKWQLVDHLPVHSSDRPFKCDICDSWFKRVKDVTIHKKRVHVRPHYVCGICQKVLSRKSSLDEHVIKVHNQINEGSAYPKNLLHKDLLKKDMINMKCEICGRGFITKRVYRIHMKSAHNVIILDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -