Gnym029681.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021715.1:4561103-4567812[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.079 12 7.7 0.6 2 23 671 692 670 692 0.94 2 15 0.0011 0.16 13.6 2.5 1 23 762 784 762 784 0.98 3 15 0.016 2.5 9.9 1.2 1 23 790 812 790 812 0.97 4 15 0.00064 0.099 14.3 3.4 1 21 818 838 818 840 0.96 5 15 1.7e-05 0.0026 19.3 2.2 1 23 846 868 846 868 0.99 6 15 0.0042 0.65 11.7 0.5 1 20 888 907 888 907 0.96 7 15 0.00025 0.038 15.6 1.7 1 23 915 937 915 937 0.98 8 15 5.7e-05 0.0087 17.6 1.3 1 23 943 965 943 965 0.99 9 15 0.00061 0.094 14.4 0.3 1 23 971 993 971 993 0.98 10 15 1.5e-05 0.0024 19.4 3.9 1 21 999 1019 999 1021 0.96 11 15 8e-05 0.012 17.1 0.4 1 23 1026 1048 1026 1048 0.99 12 15 0.036 5.6 8.8 1.6 1 21 1054 1074 1054 1076 0.96 13 15 0.011 1.7 10.4 2.3 1 21 1082 1102 1082 1104 0.94 14 15 0.00045 0.069 14.8 4.1 1 21 1110 1130 1110 1132 0.95 15 15 2.1e-05 0.0033 18.9 4.5 1 21 1138 1158 1138 1160 0.96
Sequence Information
- Coding Sequence
- ATGAAGGCATACGAGGAGGTGGCAGATGACGGACCACAAGTGAGATTCGTCAAATGCACACAGAAGCCCGGGTACCTTCTAGTAACATGCGCGGACGTGGCGAGCGCTGACTGGTTGGAGGGAGTAGTTCCTTCGTTGGTTCCCTGGGACAATGCAAGTCTCAGGACCCTTCGGGGGGACAGTCTACCGAGACCGGCAGCTGCCTGCTATGTTTATGTCCCAGATGAGGATGGCATGAGACTGGAGGGTAAACGGATCCTAAACAGGCTGAAGGTGAGCAACCGGAAGCTAAAAACATCCCTCTGGACCATTTGGGGAAACACCCCGATGGAAAAGGGGCAAATGTGGACCTTCTCCATGGATGAGGAATCCCTGGAGGAGATCAAAAGGCTGGACATGAGTCCTTACTTTGGAATGGGCCGGATTAATTTCAAGGTCAAGGAGCGAGGACCCAAGTCCAAAGGTGCAGTGGAGAACAAGGCTTCAAAACCAGGAACCTCCACCGGCACAACCACCAAAGCGCCTTCCCCACAGGCGGTAAGACCACAACTGAGGGGAAAAGGACCGGTGCAGAAGAAGGGGAAGAAGAAGGGAGGATCTTCTACAGAGGTTAGACCTGGGAAAGCCGACCAACAAAGTGGCACAAGCCCTCTCAAAAGACCGTCATTGGTCAGAGAGGAGGCTGAAGCCATGGAGCTGGGGGAGCCAACCAAGGCCAACCTTCAACACGCCAAGGCAGCTAGTGCCGTGTTGTGTCGAAGGTGGGAGAAAGAAGGCATAGACGTAGCCCTTCTGCAGGAACCATGGGTACATGGAAGGACCATAGCAGGCCTCAAACCACAAACAGGTACGTTACTCTATCATAAGCCAGCATTAAGGCCAAGAGCATGTATAATACATAGTGAAAGGGTTAATTGTGTACTAATCTCGGGGTTATGCTCTGGGGATTTTGTTATAGGAGTCCTTTCATACCAAACCGAGGGCGGGACGAAGAGTGTAGTCGTCTGTTCTGCCTACTGTCCGGGAGACGAGCCAGCATGCCCTCCACAGGTACTAAAGGCTGCAGTGGACTATTGCCGAGAGAGGGACATGCAGCTTATATTAGGATGCGATGCCAACGCCCACCATACCATCTGGGCCAGCACGGACATCAataaaagaggtgagtcattttatGAATTCATACTTAGGGAAGGGTTATTCATTGCCAATAAAGGTACTGAGCCTACTTTTGTCACGGCAGTTAGGAAAGAGGTATTAGACCTGACCTTGAGTACCAGCAGAATAAGTGATAACATAGTAGCTTGGCGGGTTTCACAGGAACCATCATGTTCCGACCACAGGCATATAAGATTCGATCTTGAGTCACCACCCCTAATAATGAGTAAGTTCAGAAATCCAAGAGAGACGAACTGGGAAGGATACAATAAATCCCTCAGAGAGTCACTTGAGGAAGGGACAGTCACTATAAAAGGGAGAGAAAGCCTAGAAGTGGCAGTTGACCAGGTTAATGAGGCAATCTTGAATGCCTACCGAGAAAACTGCCCAGAACGAACAAGGCAACGCAAAAGGAACACAGTTTGGTGGAACAATTACCTGGAGGGCTTAAGAACCCAGGTAAGAAGGTTATTTAATAGAGCCAAACTCAACCAAAACTGGGACCTATACAGGAGTAAGCTCACTCTATACAATAAGGAGATCCGGAAGGCCAAAAGGGACTCATGGAGAAGATTCTGTGAGGAGGTTCTAGAGACCACAGAATGCTCCCGAATCCACAAAGTTTTGTCCAAGGATGGCTCTAAAGACAAGGTGAGTCTCCTCAAGAAAACGGACGGAGACTATGCAGAAACGGCACAGGAAACTTTGGAGCTGTTGACAAAAGCACACTTTCCTGGAGCCACCATTGATCTAAGTATGCAGGAGGTAGTCAGCAATCCCCAAGAGGCAGGACATTTTGCAAATGGTAACTATGTCAAGAAATGGGTCTTATCTAGAGCTGGAGGAATATTAATTTGTAAGTTTTGTGGACATTTGTACACTAGAGAATTTGAGCTTTTAGTCCATGTTGTAAGACATCTTGCcaagaaaaaacttttttataaattccaGTCACAAGAACAAAGCATTGAACCATTTAGTAATAATGAGTTGGAATATCAAAATAGAGACATACTTTCTATTCATgatcaaattaaaaatgaagTAAAAGGTTCATTAAGCAACTTAAAGGAGTTGCCTTATATTCGTGCTGAAGAAACAAGATTTCAGACAAGTGAAAAGCTAtttaattgtgaaatttgtaTGAGATCGTATACTTTGAAGGACTCCTTAAGAAGGCATAAGCGTCGTCATACTGGAGAGAAACCATTTAAATGcgaaatttgtttgaaatcgTTTAGAGAGAGAAACATTTTGAATTTACACAATCGTTCTCATACAGGTGAAAAACCGTttaaatgtgaaatatgtacGAAATCGTTCGGTTTTAAAGGAAccttaaaaatacatttacgtTGTCATACTGgggaaaaaccattcaaatgtgaacTTTGCTTCAAATCCTTCACTATTAAAGATgctttaaaaaaacatttgaatcGCCATACTGAAAAACGGTTTAGAGATGAAATAAATTTCAACACACACATTGGCGAAAAACTGtataattgtgaaatttgtaCGGAATCGttcgatttgaaaaaaaattttataaagcactTACCTTGTCGTATTGAAAAACTCTTCAAATGCGAAATTTGTATGAAATCGTACGCATTGAAAGACTCTTTAAAAAGACACCTGCGTTTTCATACTGGAGAAAAAACGTTCAAATGCGAACTTTGTTCAAAATCGTTtatagaaaaaagtattttgaacACACACATGCGTTCTCATACTAGCGAAAAACCGTTTAAATGTCCAATTTGTATGGAATCTTTCGGTTTAAAAGGAACTTTGAATCGACATTTGCTTCGTCACACTGGAGAAAAACCgttcaaatgtgaaatttgtttgaaatcgTTCACTACAAAAGACGCTTTAAAAAGACACTTGCGTTGTCATACTGAAAAACCGTTCAAATGTGAAATATGTTTGAAACCGTTTAGAGAGGAAATCACTTTGAACACCCACATTCGTTCTCACACTGGCGAAAAACCTTATAAATGCGAAATTTGTATGGAATCGTTCGGTTTGAAAGTGAGTTTGGAAAAACATTTGCGTTGTCATTCTGGAGAAAAACCCTTcgattgtgaaatttgttttaaatcgTTCACAGAAAACGGTATTCTAAAAAGGCATATCCGTTGCCATACTGGGGAAAAACCGTTCAAATGTGAAATGTGTGAGAAATCTTTCAGGATAAAAGAAACCTTAAAAAGGCACGTGCGATGTCATACTGGCGAAAAACCGTACAAATGTGATATTTGTTCGAAATCGTTTAGAGAGAAAGGCAAATTGAATAGACACATGCGTTGTCACACTGATAATAAACAaccataa
- Protein Sequence
- MKAYEEVADDGPQVRFVKCTQKPGYLLVTCADVASADWLEGVVPSLVPWDNASLRTLRGDSLPRPAAACYVYVPDEDGMRLEGKRILNRLKVSNRKLKTSLWTIWGNTPMEKGQMWTFSMDEESLEEIKRLDMSPYFGMGRINFKVKERGPKSKGAVENKASKPGTSTGTTTKAPSPQAVRPQLRGKGPVQKKGKKKGGSSTEVRPGKADQQSGTSPLKRPSLVREEAEAMELGEPTKANLQHAKAASAVLCRRWEKEGIDVALLQEPWVHGRTIAGLKPQTGTLLYHKPALRPRACIIHSERVNCVLISGLCSGDFVIGVLSYQTEGGTKSVVVCSAYCPGDEPACPPQVLKAAVDYCRERDMQLILGCDANAHHTIWASTDINKRGESFYEFILREGLFIANKGTEPTFVTAVRKEVLDLTLSTSRISDNIVAWRVSQEPSCSDHRHIRFDLESPPLIMSKFRNPRETNWEGYNKSLRESLEEGTVTIKGRESLEVAVDQVNEAILNAYRENCPERTRQRKRNTVWWNNYLEGLRTQVRRLFNRAKLNQNWDLYRSKLTLYNKEIRKAKRDSWRRFCEEVLETTECSRIHKVLSKDGSKDKVSLLKKTDGDYAETAQETLELLTKAHFPGATIDLSMQEVVSNPQEAGHFANGNYVKKWVLSRAGGILICKFCGHLYTREFELLVHVVRHLAKKKLFYKFQSQEQSIEPFSNNELEYQNRDILSIHDQIKNEVKGSLSNLKELPYIRAEETRFQTSEKLFNCEICMRSYTLKDSLRRHKRRHTGEKPFKCEICLKSFRERNILNLHNRSHTGEKPFKCEICTKSFGFKGTLKIHLRCHTGEKPFKCELCFKSFTIKDALKKHLNRHTEKRFRDEINFNTHIGEKLYNCEICTESFDLKKNFIKHLPCRIEKLFKCEICMKSYALKDSLKRHLRFHTGEKTFKCELCSKSFIEKSILNTHMRSHTSEKPFKCPICMESFGLKGTLNRHLLRHTGEKPFKCEICLKSFTTKDALKRHLRCHTEKPFKCEICLKPFREEITLNTHIRSHTGEKPYKCEICMESFGLKVSLEKHLRCHSGEKPFDCEICFKSFTENGILKRHIRCHTGEKPFKCEMCEKSFRIKETLKRHVRCHTGEKPYKCDICSKSFREKGKLNRHMRCHTDNKQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -