Gnym037568.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021719.1:15796902-15798623[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00074 0.11 14.1 0.6 2 21 142 161 141 162 0.94 2 10 0.0021 0.33 12.6 0.1 1 23 174 197 174 197 0.97 3 10 3.9e-05 0.0061 18.1 0.9 2 23 213 234 212 234 0.97 4 10 1.5e-07 2.3e-05 25.7 1.2 1 23 240 263 240 263 0.96 5 10 3.8e-06 0.00058 21.3 1.3 1 23 272 295 272 295 0.95 6 10 0.0026 0.41 12.3 0.7 3 23 315 336 314 336 0.93 7 10 5.7e-05 0.0088 17.6 2.9 3 23 360 381 352 381 0.98 8 10 2.4e-09 3.7e-07 31.4 1.7 1 23 400 422 400 422 0.99 9 10 0.031 4.7 9.0 1.9 1 23 428 450 428 450 0.97 10 10 2.1e-06 0.00033 22.1 3.2 1 23 456 480 456 480 0.93
Sequence Information
- Coding Sequence
- atggTCCCAAATATTACAATCCTAGATTTTCCAACAATATGTCGCTTATGTTTAAAAGCAGGAGATTCCAGAAGTATATTTCATACACCCAGATATGTAACGTTAATTCAGAATATGACTAATTTGAagGTGAAAGATGATGATATTTTTCCAAAGATGATCTGccaaaattgtttgaataagCTAGAAGATATATGTAAATTTATAGAAATGTGTAACAATAACAATGAAATTTTGTACAACATAGGTAGATCCAATAAAAGTGAATTTGTAAAAAAGctgaatatattaaaaaacgATGACTCTTTTATTGATGATGCTGGAAATGTAAGTGATGTATCAATAAAATCAGAAAATATTTCCTATGCAGAGCAAATATATTCAGATTCAGAAAATGAGGAACCGAAACCAAAGAAAAAAGTTAGTTGTAAAATATGCCAAAACCAATTCAAAAGTTGGTACAAGCTACAGGCACATAGAAAAAATAGTTGTCCCATGgctgtaaatataaaaatagaatttgTATGCTTGATATGTGATTGGGAAGGGAATACTAAACAGGCCTTAAAAATTCATGAAAGAAAGGAACACACTGAAACTGTAGAAATGTCTAAAGGTGTtataaagaaaaagtggaagTGTGCTGTATGCTccaaattatttacaaaaaaaattgatttgcaAAGGCATAGACGAGTACATACTGGTTTAAGACCATTTATTTGTACTATTTGTAAAAAAGGTTTcacacaaaaaagtactttAGAAAGGCACATGAGCTCGTTACATTCGAATCAAGAAGAAAGACACAACTTTGAATGTTACATTTGTGAAAGAAAGTTTGTAAGAAAAGATCACCTAGAGGCTCACATGTATAATGTACATATAAAAAGACAAAATGATTCTCCATTGGAAATAGAATCCTATTCAAAATCCAAAATTTGTCAAATATGTTCAAAGACATTCAGCATTTTTTCTTATCTTCATAGTCATTTAGTAATTGTACATCAGGAAGCAAAACCACCCAAGTCTAAaccaaaattgaagaaaatgagGTTTGAGCATTCATCAAATCTCTGCAGCATATGTGgaaaatcttttgaaaaaagaaaaacctACCAGATGCACATGAACAGGAAACATTCTGAGAAAAAGAATGATCCACAGCTGAAAAAAGTAGTCGAAAGAAAGGATAAATTTCAATGTTGGCATTgtggaaaaatatttacaacacaatcaaatttaaaggTTCACATTCGAATTCATACTGGTGAGAAACCATACCAGTGCAAGTTTTGCAGTCAGAGATTTGCAGCATATTCCAGTTGGCATGAACACGAAAATATTCATACAGGAAACAAACCTTTTCAGTGTGTCCATTGCAAGAAGGCTTTTAAACAGAGAGGTTCATTGAGAAAACATTTGAGATCATCTGTACACAGGAAACCAATGGAAGATATTTTGAGTCAGCATGACGTTCGTATGTTGGTTGCATAG
- Protein Sequence
- MVPNITILDFPTICRLCLKAGDSRSIFHTPRYVTLIQNMTNLKVKDDDIFPKMICQNCLNKLEDICKFIEMCNNNNEILYNIGRSNKSEFVKKLNILKNDDSFIDDAGNVSDVSIKSENISYAEQIYSDSENEEPKPKKKVSCKICQNQFKSWYKLQAHRKNSCPMAVNIKIEFVCLICDWEGNTKQALKIHERKEHTETVEMSKGVIKKKWKCAVCSKLFTKKIDLQRHRRVHTGLRPFICTICKKGFTQKSTLERHMSSLHSNQEERHNFECYICERKFVRKDHLEAHMYNVHIKRQNDSPLEIESYSKSKICQICSKTFSIFSYLHSHLVIVHQEAKPPKSKPKLKKMRFEHSSNLCSICGKSFEKRKTYQMHMNRKHSEKKNDPQLKKVVERKDKFQCWHCGKIFTTQSNLKVHIRIHTGEKPYQCKFCSQRFAAYSSWHEHENIHTGNKPFQCVHCKKAFKQRGSLRKHLRSSVHRKPMEDILSQHDVRMLVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00459187;
- 90% Identity
- iTF_00911316; iTF_00912445;
- 80% Identity
- -