Gnym028702.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021714.1:9536128-9539463[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0011 0.17 13.5 0.7 2 23 42 63 41 63 0.91 2 17 1.1 1.7e+02 4.1 7.2 1 21 67 87 67 89 0.95 3 17 0.12 18 7.2 1.6 1 14 95 108 95 117 0.75 4 17 8.4e-06 0.0013 20.2 0.6 1 23 123 146 123 146 0.96 5 17 1.7e-05 0.0025 19.3 1.3 1 23 158 181 158 181 0.96 6 17 0.0014 0.22 13.2 0.7 2 23 191 212 190 212 0.96 7 17 0.00023 0.035 15.7 1.5 1 20 218 237 218 240 0.93 8 17 0.00087 0.13 13.9 0.2 1 16 246 261 246 263 0.87 9 17 0.25 39 6.1 0.8 2 23 299 320 298 320 0.89 10 17 0.031 4.8 9.0 2.4 1 23 326 348 326 348 0.98 11 17 0.0091 1.4 10.7 2.5 1 23 354 376 354 376 0.93 12 17 0.014 2.2 10.1 2.4 1 23 382 405 382 405 0.98 13 17 0.0002 0.031 15.9 1.5 1 23 417 440 417 440 0.96 14 17 3.5e-05 0.0054 18.3 0.3 3 23 451 471 449 471 0.97 15 17 0.00013 0.019 16.5 0.3 1 23 477 499 477 499 0.96 16 17 1.7e-05 0.0026 19.2 3.4 1 23 505 527 505 527 0.99 17 17 0.0024 0.38 12.5 0.0 1 16 533 548 533 554 0.82
Sequence Information
- Coding Sequence
- ATGATATTTATAAAGCAATTAGAGAAGAAGCTATGCAACCGACGCAAAAAAATCACTAATAAATCCAGTAGAAAAACTCCCAGAAAACCTATAGTGGAACCAGTGATTTTGAACCAAGCCTTAGAATGTAAAAAATGCTCTAAAAAGTTTTCTAACAACGTAGATTTCGCGTTACATTCCATAGAACATAACGAAGAGTATAAATGTCATTTATGCGATTTTAAACTCAAATCTTTATATCGCTTTGAAAAACATGTCCGATGTCACGAAGgctcaaatttatataaatgcgAAATATGCGAAAAGCCTTTTAAGATAGGTACGCACGCTTTAGAACATGTGCACTTCCACTCGGGAGAAAAACCTTTTCCTTGCGAAATATGCGGAAAACGTTTTATGTACAGTAGATCGTTAAGCGCTCATAGACGTTTATCGCACTATTCGGTCTTAACGGGTAAACCTTTGGTTAAATATGACTGTAAAATATGCGGTAAACATTACGAATCATATCCGGGCTTACAAAGACACATGCTCAGCAAACACGATGATTCTGGAATCGATCGTTCTGTGATGTGCGATGTTTgtggtaaaaaaattaaaaataaagataaattgaaatttcatttgaGGATACATAGCGGAGATAAACCGTTTTCTTGTTTGGTATGTCACAAAAAGTTTGCTAAAAAGGATTTCCTTCAGGCTCATATGCCTGTACATACCGGAGAAAAACCTTTTTCTTGTAAAATTTGCGGAAAAATGTTCTCTCATCGCGCCCCTTTATGGAAACCCCGAAAAAAGCGTAGGACGaatagaaaatcaaacaaaacagaaaaaataaaaaagaagacagtAAAATCCTCCATACTTCCAATAAAACTCGAAATACCTCTGATGTGCTTTTATTGCAACACCGAATTCCATACAAACGTCGAATATGCCTTACATTCCATAGATCATAACAAAGATCGAAAATATTCTTGTCATTTTTGTGAGTACACGAATAATTCCAAGTACCGTCTAGAAGCACATATAAGAGCTCATGAAGGATCTTCCAAGTACCGATGCGAGATTTGTAATAAACCTTTTAATATAAGTACCCATGCTAAGGAACACCGGTACTTCCATACTGGAGAGAAGCCTTTTCAATGCGACATATGCGGTAGCCATTTTATGTTTTCCAGAATTTTAACCAAACACAGAAGATCGGCACATTATGAAGCTATTTTTGGAAAGCCTTTGGCAAAATATGATTGTAAGGTATGCAACAAACATTACGAATCATTGCCTGGTCTTCAACGTCACATGTACAGCAATCATAACGACACAGGAGTCGACTGGTCAGTAATATGTGATATTTGTGGGAAGAAAATAGCTTCAAAAGAAAAGTTGAAATATCATTTACGAACTCACACTGGAGATAGACCGTTCGCGTGTGTTTCTTGCCCAAGAAGGTTTCCCAAAAAGGATCAGCTTAAAGAACACGAAAGGGTACATACAGGCGAAAAACCTTTTACATGTAGTTATTGTGGGAAAACTTTTGGACATAGAGCGCCTTTTAGGTATCATATTAAAACACATACAGGGGAGAGGCCTTATAGTTGTCCTATTTGCGGAAAAGGGTTTATTTCGAAAGCTGCTCAATCTGGACATGCACTAACTTGtgtaaaaaaatga
- Protein Sequence
- MIFIKQLEKKLCNRRKKITNKSSRKTPRKPIVEPVILNQALECKKCSKKFSNNVDFALHSIEHNEEYKCHLCDFKLKSLYRFEKHVRCHEGSNLYKCEICEKPFKIGTHALEHVHFHSGEKPFPCEICGKRFMYSRSLSAHRRLSHYSVLTGKPLVKYDCKICGKHYESYPGLQRHMLSKHDDSGIDRSVMCDVCGKKIKNKDKLKFHLRIHSGDKPFSCLVCHKKFAKKDFLQAHMPVHTGEKPFSCKICGKMFSHRAPLWKPRKKRRTNRKSNKTEKIKKKTVKSSILPIKLEIPLMCFYCNTEFHTNVEYALHSIDHNKDRKYSCHFCEYTNNSKYRLEAHIRAHEGSSKYRCEICNKPFNISTHAKEHRYFHTGEKPFQCDICGSHFMFSRILTKHRRSAHYEAIFGKPLAKYDCKVCNKHYESLPGLQRHMYSNHNDTGVDWSVICDICGKKIASKEKLKYHLRTHTGDRPFACVSCPRRFPKKDQLKEHERVHTGEKPFTCSYCGKTFGHRAPFRYHIKTHTGERPYSCPICGKGFISKAAQSGHALTCVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -