Gnym022121.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021711.1:15122986-15126227[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.084 13 7.6 6.3 1 23 258 280 258 280 0.98 2 11 6e-05 0.0093 17.5 0.6 2 23 328 349 328 349 0.95 3 11 0.00041 0.063 14.9 1.7 1 23 354 377 354 377 0.98 4 11 2.5e-06 0.00039 21.8 2.8 1 23 382 404 382 404 0.96 5 11 3.9e-06 0.00061 21.2 0.1 1 23 410 432 410 432 0.96 6 11 6.3e-05 0.0097 17.5 3.2 1 23 438 460 438 460 0.98 7 11 2.3e-07 3.5e-05 25.2 2.0 1 23 466 488 466 488 0.99 8 11 1.3e-06 0.0002 22.8 2.1 1 23 494 516 494 516 0.97 9 11 0.00012 0.018 16.6 3.1 2 23 523 544 522 544 0.97 10 11 3.1e-06 0.00048 21.6 0.3 2 23 551 572 551 572 0.97 11 11 0.00011 0.017 16.7 4.3 1 23 578 600 578 600 0.98
Sequence Information
- Coding Sequence
- atggacGATGTAATTTTGCTTTGTGAATCAAATTTTTGCAGACTTTGCGGAGAAAGGAATGAAAATGGTGTATATATATTTAGTAAAGAAGAAAATTCTACAAATCTGCAAACTTTAATCAATAAATACCTACCTATATCTGTCCACATAGAACAAAACTTCCCAAAATATATTTGTCCAGGATGCCATATACAATTAGAATCGACAAAGTTGTTTTTGGATTTAATAATAGTCGGACAAGCAAAATTAAGAGCTGCACTGCAAAAGGAACAAGAACTTCTTCAAAATCAAGTTACTGTAGAAATTAACaccAATATAAACGATCCTTTCTATACATCAGACCATATTTTGAGGTTGGATGCAGAAGGATTAGATAAACCTAAAAGAAAAAGAGGCAGACctgcaaaaaaattaattgaaaatgtagAGAAAGAACCATTAGAGGAAAATAAAGTAGAAACCAAAAATAATGAAGAACTAGAAAATACGACAACAGAAGGTCGCAGGAAAAGAATAGTTCGTGCACCTCTTCGATTTCATGGAGTTGTTCAGGGTAAAGAATTAGAAGACATACTGAAAAAAGAAGGAGTTTTTGAtgaggaaaatgaaaaaattgaagtaAATAAGGAAGATCCTCATAAATTTACACGTAATGTAGTTATAGGTAGAACTGAAGGTAATACTGGAGAAGACTTAGGAAGaccaatttttataaatagaatAAGAAATAAGCCCAAATCAGTTTTATTTAAAAGGGCTGGATTGGGCAATTTTGAGTGCAAGATTTGCTTGAAACGATTTATACATAAAGTCCATTACAGCTTTCATCTGAGATCACATGAAGATGAAGGCTTAAACATAAAATCTCTGGAAAATAATGAACTTAATAGTCCAACTATAACCAAACAGGACTGTACCctagatttttccaatgttATAAACGAAGTACCTTCATCAGATTCTCAAGAAAACTATGAAAACGTGTGTAATAAATGCAAGAAAACTTTTCCAACACTCGATGAGTTGAAAACACATTCAATAGTTCACGAATCCAAGAAATATTCTTGTGACGATTGTGGCAAAGTACTACAGCATTATAGCAGTCTTTTGTACCACAAGCAAACCGAACATACCAGTAAGAGATTTATATGCAATACCTGCGACAAAAGCTTTAAACATCAACAGCTCCTACAAAGACACCAGGTTGTCCATTCTGAAGCAAGACCATATATCTGTCCGATTTGTAATGCTACTTTTAAAACCCAAGCTAATCTAATGAATCATGAAGCAGTGCATACAGGGGAGAAGCGGTATGAATGTACCAAGTGTAATCAAAAATTTGCTCACAAAACATCGTTGAGCCTCCATCTAAGATGGCACGAGGGTAGAAAACCATACACTTgcaattattgtaaaaaaagttTCTCGCAAAACGGTAATTTATTGGAGCACAAAAGAATCCACACCGGTGAGAAGCCTTTCTTTTGCGAGGTTTGCGGTAGGCATTTTACCACATCTTCCCAGTTGAAAATTCATGTAAAGATACATACTGGGGAGAAACCGTGGAAATGTGATGTGTGTGACAAAAGTTTTTTGCACAAAGATTCCTACACATATCACATGCGTCGACATTTCAACGAACGTCCTAACGTTTGTAATATCTGCAGAAGAAGTTTTACTGAACCTTGGGGGCTCAAGAAGCACATGCGTATACACACAGGGGAAAAACCATTCAGCTGCTTCTTTTGCGAAAAATCATTTTCCGACAAATCTAACAGAGACAAACACACTCGTACTCACCTAAGATTTGCAAAacacaaaaatatcaatatagcTAGCAATGATGATGTGCACAATATCGAAGAAAAGAAATTTGCTCATAATGATTTTCAGTTGACTCAATTAGTTGATCAACAAGGGAATCCCATCAGCATTACCACGCAAGATGGTCAGACTGTACCTGTCGTTACTTCAGGAAATGATAACGATAGTAATTTACATGGTTTGTTACCAGATGGCAGTTTAGTACCCATAGAAATTGCTGTACAAGATAAGGAATTGGAAGCAGAACTGGCTCAAGGAACCCCACTGAATATATTACAAACAGTAGAGCCTGAATCGATAACCATTCAAGAAGTTCTCCAACCCAAAGATATTGTTGAAAATCTAAATCCAAACTTTCAGTTATTAACAAATAACGAAGGAGAGCAAGTTTGCTTTATTACTTATTCAATGGAAGAAGAGGATAATTTGACACAAGAATTACTACTGGAATCAGCTCTTGTGCATAATAATTAG
- Protein Sequence
- MDDVILLCESNFCRLCGERNENGVYIFSKEENSTNLQTLINKYLPISVHIEQNFPKYICPGCHIQLESTKLFLDLIIVGQAKLRAALQKEQELLQNQVTVEINTNINDPFYTSDHILRLDAEGLDKPKRKRGRPAKKLIENVEKEPLEENKVETKNNEELENTTTEGRRKRIVRAPLRFHGVVQGKELEDILKKEGVFDEENEKIEVNKEDPHKFTRNVVIGRTEGNTGEDLGRPIFINRIRNKPKSVLFKRAGLGNFECKICLKRFIHKVHYSFHLRSHEDEGLNIKSLENNELNSPTITKQDCTLDFSNVINEVPSSDSQENYENVCNKCKKTFPTLDELKTHSIVHESKKYSCDDCGKVLQHYSSLLYHKQTEHTSKRFICNTCDKSFKHQQLLQRHQVVHSEARPYICPICNATFKTQANLMNHEAVHTGEKRYECTKCNQKFAHKTSLSLHLRWHEGRKPYTCNYCKKSFSQNGNLLEHKRIHTGEKPFFCEVCGRHFTTSSQLKIHVKIHTGEKPWKCDVCDKSFLHKDSYTYHMRRHFNERPNVCNICRRSFTEPWGLKKHMRIHTGEKPFSCFFCEKSFSDKSNRDKHTRTHLRFAKHKNINIASNDDVHNIEEKKFAHNDFQLTQLVDQQGNPISITTQDGQTVPVVTSGNDNDSNLHGLLPDGSLVPIEIAVQDKELEAELAQGTPLNILQTVEPESITIQEVLQPKDIVENLNPNFQLLTNNEGEQVCFITYSMEEEDNLTQELLLESALVHNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00459175; iTF_00911317;
- 90% Identity
- -
- 80% Identity
- -