Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: -
Assembly: GCA_963978555.1
Location: OZ021714.1:9513565-9516138[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00017 0.027 16.1 0.2 1 23 15 38 15 38 0.95

2 15 0.083 13 7.6 6.7 1 23 50 72 50 73 0.93

3 15 0.00014 0.021 16.4 0.3 3 23 84 104 83 104 0.94

4 15 6.9e-05 0.011 17.3 1.3 1 23 110 132 110 132 0.97

5 15 1.1e-05 0.0016 19.9 5.0 1 23 138 160 138 160 0.99

6 15 2.6e-05 0.004 18.7 0.5 1 23 166 189 166 189 0.96

7 15 2.6 4e+02 2.9 1.6 2 17 237 252 236 258 0.79

8 15 0.062 9.6 8.0 1.4 1 23 264 286 264 286 0.96

9 15 0.00028 0.044 15.4 1.8 1 23 292 314 292 314 0.89

10 15 5.2e-06 0.0008 20.9 2.5 1 23 320 343 320 343 0.97

11 15 0.001 0.15 13.7 3.9 1 23 355 378 355 378 0.96

12 15 4.4e-05 0.0068 18.0 0.2 2 23 388 409 387 409 0.97

13 15 2.3e-05 0.0036 18.8 2.1 1 23 415 437 415 437 0.97

14 15 3.7e-05 0.0057 18.2 1.3 1 23 443 465 443 465 0.99

15 15 8.2e-05 0.013 17.1 0.4 1 21 471 491 471 492 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00017	0.027	16.1	0.2	1	23	15	38	15	38	0.95
2	15	0.083	13	7.6	6.7	1	23	50	72	50	73	0.93
3	15	0.00014	0.021	16.4	0.3	3	23	84	104	83	104	0.94
4	15	6.9e-05	0.011	17.3	1.3	1	23	110	132	110	132	0.97
5	15	1.1e-05	0.0016	19.9	5.0	1	23	138	160	138	160	0.99
6	15	2.6e-05	0.004	18.7	0.5	1	23	166	189	166	189	0.96
7	15	2.6	4e+02	2.9	1.6	2	17	237	252	236	258	0.79
8	15	0.062	9.6	8.0	1.4	1	23	264	286	264	286	0.96
9	15	0.00028	0.044	15.4	1.8	1	23	292	314	292	314	0.89
10	15	5.2e-06	0.0008	20.9	2.5	1	23	320	343	320	343	0.97
11	15	0.001	0.15	13.7	3.9	1	23	355	378	355	378	0.96
12	15	4.4e-05	0.0068	18.0	0.2	2	23	388	409	387	409	0.97
13	15	2.3e-05	0.0036	18.8	2.1	1	23	415	437	415	437	0.97
14	15	3.7e-05	0.0057	18.2	1.3	1	23	443	465	443	465	0.99
15	15	8.2e-05	0.013	17.1	0.4	1	21	471	491	471	492	0.95

Sequence Information

Coding Sequence: ATGGCCTACGAACACCGGTACGTCCACGAGAATAAAAAACCCTTCGAATGCGACATATGTGGAAAAACATTCTACGCCTCAGCTTCGGCGAAAAACCACCGGAACAATATACACTACGAAGCTCTTACTGGCCAAAAGCAGGAaaaattcgattgtaaattgtGTAATAAGCATTACAGCAACGAGGCAGGATTATCGCATCACAATTTTCGACATCACAAGGAATTGTACAAGTTGAGACCtgctttgtgtgaaatttgcgGGATGAACTTTTCGAGCCAAGCAAGATTGAACAAGCACATGCCGACGCATAGCGCGGAAAAACCGTATTCTTGTAACTTATGTTCGAGCAGTTTTTCGCGAAATGTTGAATTGAAACAGCATCAGTTCGTGCATACCGGAGAGAAACGTTATACTTGTAGTTTCTGCGGAAAAAAGTTCGCTCACAACTCCTCTTTCAACTATCATTTAAAGATGCATACCGGCGAAAAACCTTTCAGTTGCGTTGTATGCGGAAAGGGGTATATTTCTGCGGGAAATTTAAAGCTTCATATAAAGAACTGTCATAACGTaagaaaaaaacgaaaatacGTGAAGAAGAAATTTAAAGAAAACGATGACAATAAAACACAGGAGAGAAAACCCCGAGCAGTTTATACAAAAGATCCAATGCTTGTAGCAAAACCGAAAGATTTAGATGAACCTTTAACTTGTAAATTCTGTTTGAaagattttaaaaacaatttagacTTTGCCTTCCATTCCAAAGAGCATACTTTAGATGGTACATACTCTTGTCACATCTGCGATTATTCCAATATTTCCAAAACTCCGTTTGATCTGCATATGCGTGAGCACGAAGGTATTAACAAATATAAATGCCCTATTTGTACCAAAACTTTTAAGCAAAGTAAAGACGCCGTGGaacataaatattttcatacaggAGAAAAACCGTTCCAATGCGAAATATGTGGAAAGCATTTTCCATACACCAAAAGTCTAACAGCTCACAGACGCAACACCCACTACGAAATAATCACAGGCAAACCTCTACAAAAATACGATTGTAAAGTATGCAACAAACACTACGAAAGCCATTCGGGGTTGGTTCGACATTACTCTTCGAGTCACAAAGAATTAGGTTACGACTATTCAGTGGTGTGCGATATTTGTGGAAAAACCATCGCCACcagaaacaaattaaaataccaTTTAAGAGTACACTCCGGTTACAAACCGCACGAATGCCAAGTTTGTAAAAAAGGTTTTTCAAAAAAGCAAGAATTGAAAATTCACGAAAGGATCCATACCGGCGAAAAACCTTTCACTTGCTCGTTTTGCGGGAAAAAGTTCGCGCAATTAGCTCCTTATAGATATCATATTAAAACTCACACTGGTGAAAGATCTCACGTTTGTCTTATTTGTAAAAAAGGGTTTATTTCGTTAAGTAATATGAAAATTCACATGAAAAGTTGCGATCAATCGAACGTCAAAGCCGAAAATACAGTTATTGCAATTTCTCAATAG
Protein Sequence: MAYEHRYVHENKKPFECDICGKTFYASASAKNHRNNIHYEALTGQKQEKFDCKLCNKHYSNEAGLSHHNFRHHKELYKLRPALCEICGMNFSSQARLNKHMPTHSAEKPYSCNLCSSSFSRNVELKQHQFVHTGEKRYTCSFCGKKFAHNSSFNYHLKMHTGEKPFSCVVCGKGYISAGNLKLHIKNCHNVRKKRKYVKKKFKENDDNKTQERKPRAVYTKDPMLVAKPKDLDEPLTCKFCLKDFKNNLDFAFHSKEHTLDGTYSCHICDYSNISKTPFDLHMREHEGINKYKCPICTKTFKQSKDAVEHKYFHTGEKPFQCEICGKHFPYTKSLTAHRRNTHYEIITGKPLQKYDCKVCNKHYESHSGLVRHYSSSHKELGYDYSVVCDICGKTIATRNKLKYHLRVHSGYKPHECQVCKKGFSKKQELKIHERIHTGEKPFTCSFCGKKFAQLAPYRYHIKTHTGERSHVCLICKKGFISLSNMKIHMKSCDQSNVKAENTVIAISQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -