Gnym028705.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- ken
- Assembly
- GCA_963978555.1
- Location
- OZ021714.1:9558476-9562430[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.7 1.2e+03 1.5 0.6 3 23 78 95 77 95 0.66 2 20 0.00017 0.026 16.1 1.1 2 23 99 120 98 120 0.94 3 20 0.17 27 6.6 0.4 1 23 125 147 125 147 0.90 4 20 0.062 9.6 8.0 3.2 1 23 151 173 151 173 0.98 5 20 0.0038 0.58 11.9 0.6 1 23 179 201 179 201 0.97 6 20 0.00053 0.082 14.5 2.9 1 23 207 230 207 230 0.95 7 20 3.7e-06 0.00057 21.3 0.9 1 23 241 264 241 264 0.97 8 20 3.1e-06 0.00048 21.6 0.3 2 23 273 294 272 294 0.97 9 20 0.34 52 5.7 5.7 1 21 300 320 300 322 0.88 10 20 0.0057 0.87 11.3 0.6 2 23 424 446 423 446 0.94 11 20 0.22 34 6.3 2.2 1 21 470 490 470 492 0.90 12 20 0.089 14 7.6 0.3 1 23 496 518 496 518 0.96 13 20 0.0015 0.23 13.1 0.4 1 23 524 547 524 547 0.96 14 20 0.00059 0.09 14.4 4.5 1 23 553 575 553 575 0.96 15 20 0.012 1.9 10.3 0.2 1 23 581 604 581 604 0.93 16 20 8.2e-06 0.0013 20.2 1.8 2 23 616 638 615 638 0.97 17 20 4.8e-05 0.0075 17.8 2.0 3 23 652 672 650 672 0.96 18 20 2.5e-05 0.0038 18.7 0.9 1 23 678 700 678 700 0.98 19 20 3.3e-06 0.00051 21.5 0.2 1 23 706 728 706 728 0.98 20 20 7.5e-05 0.012 17.2 0.4 1 22 734 755 734 755 0.97
Sequence Information
- Coding Sequence
- ATGGTAAATCCAAGCTCTTCgaaaattaacaataattccgaagaaataataatagtaatcgACGAAGATACAGATATAGACGAATACAATAAAGTAAAAGAAGAACATGAATATTTTTCCGATACAAAATACGTTTATATCGATggacaaaaaatagaatttgaAGATATAGTCGAAATAGTAAACGAAGATGAAAAACAATCATCAAAATGGTCCAAAAAATTGGGACTTTGTAGCATTTGCGGGAAATTAGTTAAAAATCTCGTAAAACACTCTTCAACGCACGGCAAACAACAGTGCGATctttgcaataaaatttttaagacTTACGAAGACCTACAACAACACAAAACTGAACATATAACCAATAACTACCCTTGTAATAAATGCGTTTTGGTTTTTAAAGACGCTTTAGATTACGTTTACCACAATTACTCTCACGACAACATTTATTCTTGTACGCATTGTTCGTTCAAAACTACCAGAAAACCCTCTATAAAAGGACACATCCTCAGACATCAAGGAAAATTCaactattattgtgatatttgcgGTAAAGGTTTTCTGGTGCAGTGTATGCTCGATTCTCACATGGAAATGCATTTGGACATCAAAAAATATTCCTGTCAATATTGTGATAAGAAGTTTGCCGTAAAAAGATACCTTCACGGACACATGACGCTAAATCATCGAAAAGAACTGTTCGGCGTCGATGAAAACTTTAAATGCGAAGTGTGCGGAAGGGAATTTACTTTTTCGAAGAGCCTCGCGCGTCACAGAAACATCATGCATCGGATCGGTGTAAATCTTACTGTGGAATGTCCAGTTTGTCACAAAGTAATCGCTAATAACTATAACCTCAAACTGCACATGAGAATTCACACTGGCGAGAAGAAGTACTGCTGCGATTTGTGTGGAAAAGCTTTTTCCGCGtttaaatattggaaaaaacatTGCAAAGCTCATCAGGGGAAAAAATCTGACGAGCCGCAAGAGGAAGGGGCTATTTTGGGTTTTTATTTGGCCGATACGGAAAATGTCAATTTGGATGATATTGGGGAACATTATATGGTTGATTTTGGgcCGATTAAAACAGAAATCGACGAAGACTCAAATTACGAATCTTCAAAATCGAGACAAAGAAAATCGAAATTAACCAAAAAAGGTAAAACTAAAGCCGGAAAATCGACCGTCACAAGAAGACCCAGGAAATCATCACCGGCAAAATATATTCCAAAAGTAAAACCGAATCACAAAGCCAGAGCGTGGGTATGTAAAATTTGCTTCGAAGAATTCGACTCGCGAAAAAACATGTTCGACCATAGAAAACTAGTCCACGACGACATCGACGACGTTTTCAAAGAAGATTTAAATCAAAAATACACCTACGACGAGGTACTGGAATTCTTCACTTGTAACAACTGCTCAGCCGAATTTCAAACTAAAGAAGAAGTTGAAAAGCATTGTGAATCTCACGACGAAAAATACGATtgtcaaatttgtcaaacaaCCTTCTTAGGTGCCTTGAACTTCTCCGTGCACATGCAACAACATAGGGAGGATAATAATTTTCCTTGTCCCATGTGTCCGCATACAGCAAGTAGAAAATCAGCTATGCTGACTCACATTACCCGAATGCACTTCAGAAAATACGATTTTCAGTGCCGTACGTGCGGCAAATGCTTCAACGACGCTACAACTTTCAAAGaacatgaaaatttccatttggGGGTTAAACCGTTCGTCTGTATAGTTTGTAACAGAGAATTCATCTATTCCCGTTACTTAGTAGCCCATCAAATCCGAAATCACAGAGTTAGCGTTTTAGATAAAGATTCTAAAACTCAATGCCACATGTGTCCGAAAATGTATGCTAGAAGCGAAACGCTAGTCAAGCATATGCTGACTAAGCATTTAACTTACCACGAAGGTCCGCACGAGAAGAAGCATCTCTGTGACGTATGCGGACAAGGATTTTCTAGAAcggataaactaaaaatccatTACAGAAAACATACTGGAGAAAAACCTTACTCTTGCGTCTACTGTAGTAAAAGTTTCATCAAAAAAGATTATCTTATCATGCACGAACGTATCCATAATGGCGAGAAACCCTATATATGCGATTATTGCGGCAGGTCGTTTAATCAAGGGGCTCCTCTTAGGATCCACATGAGGTCGCATACTGGGGAGAGGCCTTATAAATGCCCTCACTGCGAAACCGGATGCGTTTCTAAAGGTGCTCTTAATGCGCATATTAGAAGCTGTTTGAATTCTGtattataa
- Protein Sequence
- MVNPSSSKINNNSEEIIIVIDEDTDIDEYNKVKEEHEYFSDTKYVYIDGQKIEFEDIVEIVNEDEKQSSKWSKKLGLCSICGKLVKNLVKHSSTHGKQQCDLCNKIFKTYEDLQQHKTEHITNNYPCNKCVLVFKDALDYVYHNYSHDNIYSCTHCSFKTTRKPSIKGHILRHQGKFNYYCDICGKGFLVQCMLDSHMEMHLDIKKYSCQYCDKKFAVKRYLHGHMTLNHRKELFGVDENFKCEVCGREFTFSKSLARHRNIMHRIGVNLTVECPVCHKVIANNYNLKLHMRIHTGEKKYCCDLCGKAFSAFKYWKKHCKAHQGKKSDEPQEEGAILGFYLADTENVNLDDIGEHYMVDFGPIKTEIDEDSNYESSKSRQRKSKLTKKGKTKAGKSTVTRRPRKSSPAKYIPKVKPNHKARAWVCKICFEEFDSRKNMFDHRKLVHDDIDDVFKEDLNQKYTYDEVLEFFTCNNCSAEFQTKEEVEKHCESHDEKYDCQICQTTFLGALNFSVHMQQHREDNNFPCPMCPHTASRKSAMLTHITRMHFRKYDFQCRTCGKCFNDATTFKEHENFHLGVKPFVCIVCNREFIYSRYLVAHQIRNHRVSVLDKDSKTQCHMCPKMYARSETLVKHMLTKHLTYHEGPHEKKHLCDVCGQGFSRTDKLKIHYRKHTGEKPYSCVYCSKSFIKKDYLIMHERIHNGEKPYICDYCGRSFNQGAPLRIHMRSHTGERPYKCPHCETGCVSKGALNAHIRSCLNSVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -