Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: SNAI1
Assembly: GCA_963978555.1
Location: OZ021717.1:1898436-1901592[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.002 0.31 12.7 1.2 1 23 309 331 309 331 0.93

2 12 2.9e-05 0.0045 18.5 1.6 1 23 339 361 339 361 0.99

3 12 1.4e-05 0.0021 19.5 0.3 2 23 369 390 368 390 0.97

4 12 5.2e-06 0.0008 20.9 0.5 1 23 396 418 396 418 0.98

5 12 3.7e-05 0.0057 18.2 2.4 1 23 425 447 425 447 0.99

6 12 7.2e-05 0.011 17.3 0.4 1 23 453 475 453 475 0.95

7 12 1.2e-05 0.0019 19.7 0.1 1 23 481 503 481 503 0.98

8 12 7.3e-07 0.00011 23.5 1.2 1 23 509 532 509 532 0.96

9 12 4.3e-06 0.00066 21.1 0.5 1 23 538 561 538 561 0.96

10 12 1.7e-05 0.0027 19.2 2.0 1 23 567 589 567 589 0.99

11 12 0.00012 0.018 16.6 0.4 1 23 595 617 595 617 0.94

12 12 0.00074 0.11 14.1 0.1 1 23 623 647 623 647 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.002	0.31	12.7	1.2	1	23	309	331	309	331	0.93
2	12	2.9e-05	0.0045	18.5	1.6	1	23	339	361	339	361	0.99
3	12	1.4e-05	0.0021	19.5	0.3	2	23	369	390	368	390	0.97
4	12	5.2e-06	0.0008	20.9	0.5	1	23	396	418	396	418	0.98
5	12	3.7e-05	0.0057	18.2	2.4	1	23	425	447	425	447	0.99
6	12	7.2e-05	0.011	17.3	0.4	1	23	453	475	453	475	0.95
7	12	1.2e-05	0.0019	19.7	0.1	1	23	481	503	481	503	0.98
8	12	7.3e-07	0.00011	23.5	1.2	1	23	509	532	509	532	0.96
9	12	4.3e-06	0.00066	21.1	0.5	1	23	538	561	538	561	0.96
10	12	1.7e-05	0.0027	19.2	2.0	1	23	567	589	567	589	0.99
11	12	0.00012	0.018	16.6	0.4	1	23	595	617	595	617	0.94
12	12	0.00074	0.11	14.1	0.1	1	23	623	647	623	647	0.94

Sequence Information

Coding Sequence: ATGTCTTCAAACGAAGAAGCGTGTGTAATTTGTAACGTAGGGTGGATTCCAGGCACAgattatattgaaatatttagtGCTGAGTCTAATAGAGAATCAGACCTTCACGTTGCATCATTAGTTTCGAAATTATTAGACAAAGAAATCAAAGAGGATCCAAACGGTCCACaacttatttgtaaaaaatgtttcacaCTTATAACTGAACTTGATGAATTACACAATAGAGTATCAGAAATTAAACAGGAAATATTTGATACTAACTCGATAAAACAGGAAGATGACCTACAGGAAACTCAGTCTGAATCTGGAAATGAtcaatttcccaaaaaaatgcTTTTTATACCTTCATCAGATGAAGACTCTACACAGGTTTCTACAGAAAAAACTAGTTATGAGAATATCCAAATGGAACTTGTTAAAATGAATAGTATTTCTGCTTTAGAAGCAGATGTGGAAGAACAATCAAGAGAAGAAAATACTGATATGGAAATCGAGACAAACGTAGAATATCAACAGTTTTCAGCAGAGGAATGCGAAATTTTAGATGCAGGTGCAATGGAGAATTCTTCTGATTCAGATTATGAGCCATCAAACATAATATCTTCTTCACTTGTCCATTCTATCATGCAAGTTGGTAAAGAAACAACAATAAAATTAGATGGTTCAGGTGCCGAAGGAACTCTAAAAACGACATCAGCAACTAATTTAGAGAAAAAACCAATCATATTACGAAAGAAAATATCAACTATGCCTATGGAAATGCACctggaagaaaaaaaatctgAATCAACGATTGCTTTGCCAGTAGTTTCTAAAGAAGGCAACTTATATACTTGTCTTTTATGCCAAGGAGATCAAACAGTTGCTGGTGAATCAAAAGCGATTGTTGCACATGTCAAGGACACTCACGGTGTCCGTTTGTACATCTGCGACGTTTGCGGTCAAGATTTCTGTAAAAGAAACCAACTATCTGCACATTTCGATGAACATGTGGCATCAGAAGAGGGAGATTTTCAATGCGAAGTTTGTAATAGAATTTTTAGTAACTTGAGATTGTTTCGCATTCACAAAAGAATGCATTATCCGCAAACGAAAGCTTGGGTATGTGACACCTGTGGAAAAAAATACAGCAGCAAGAACCTTCTAGAAGAACATGTCAATACACATTTAGGTGTCCGTCCTTACATTTGTGAAGTGTGCGGTAAAGATTTTGCAAGTAAATACACCTATAAAGCTCATGAAAAAACCCACGAAGTTAGACCGAGGCCATACAAGTGTTCTCAATGTGAAAAGTCTTTTCTCAGCCAACAAAATCTCACTCAACACGAACGCACTCATCTTGGTATGAAGGAATATGCTTGTCAGTTGTGTGGTAAACAATTCGGTTCATCTCACAACCTGGAAGTGCATTCGATTGTTCATACTGGATATAAACCATTTGTTTGTGGATTGTGTGGAAAAGCTTTTGCCAGGAAAGCGGAGATAAGAGATCACGAAAGAACTCACACAGGCGAAAGACCGTATCAATGTGAATTTTGTGGAGCAACATTCAGTCAACGGTCAAATTTACAATCGCACAAAAGAGCTACTCATTATGATGATAAAAGGTATCAATGTACCATTTGCGGTAAAGGATTCAAAAGGAGACGTCTCTTGGACTATCACATAAAAGCAGCACATACAggagaaagaccttttaaatgcgAAGTATGTGAAGCGACTTTCGTCTATCCGGAACATTTCAAAAAACACCGTAGAATTCATACAGGAGAAAAACCGTTCCTGTGCGAAGTCTGCGGAAAAGCGTTCAACAGCAGAGACAATCGTAATGCTCATAGGTTTATACATTCGGACAAAAAACCGTATGAATGTTTGGTGTGCGGCGCTGGATTTATGAGGAAACCGTTGCTGTATCAgcaTATGCAAACTCGAGGCCATTTGAACGATACAATCGTAGTAAATCAACCCAGACTTACAACTGAGGATGATGAATTAGTGACTGTGAACGAAGCAGGTGAAATGGAAATTATGGAGGGTGCAACAGAGGGAAAGTTATATATCCAAGACCAAGACGGCAATGAACACATAATTATAGATGGACAGCAAATTAGCTTCGCCGAAGTAGGCAGTGAGGGAGAAAACGAAGAAATAATCGATGAAATTGAGCaggtGGTTACTGATCAAACCGATGACGATTGTGAAGAGATAATCACCAGTGACGCTTTGGCTAGTGGGGAAACTCAAATAATTGAGACTCCAGATGGTCCTATACAGTTAGTTAAAGTTCGCATTCCCAATGAAAATGGAGAGGAAGAGGAGGCGTGGATTAAAATAGTCCCCGAATAG
Protein Sequence: MSSNEEACVICNVGWIPGTDYIEIFSAESNRESDLHVASLVSKLLDKEIKEDPNGPQLICKKCFTLITELDELHNRVSEIKQEIFDTNSIKQEDDLQETQSESGNDQFPKKMLFIPSSDEDSTQVSTEKTSYENIQMELVKMNSISALEADVEEQSREENTDMEIETNVEYQQFSAEECEILDAGAMENSSDSDYEPSNIISSSLVHSIMQVGKETTIKLDGSGAEGTLKTTSATNLEKKPIILRKKISTMPMEMHLEEKKSESTIALPVVSKEGNLYTCLLCQGDQTVAGESKAIVAHVKDTHGVRLYICDVCGQDFCKRNQLSAHFDEHVASEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQTKAWVCDTCGKKYSSKNLLEEHVNTHLGVRPYICEVCGKDFASKYTYKAHEKTHEVRPRPYKCSQCEKSFLSQQNLTQHERTHLGMKEYACQLCGKQFGSSHNLEVHSIVHTGYKPFVCGLCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYQCTICGKGFKRRRLLDYHIKAAHTGERPFKCEVCEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGAGFMRKPLLYQHMQTRGHLNDTIVVNQPRLTTEDDELVTVNEAGEMEIMEGATEGKLYIQDQDGNEHIIIDGQQISFAEVGSEGENEEIIDEIEQVVTDQTDDDCEEIITSDALASGETQIIETPDGPIQLVKVRIPNENGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01106604;
90% Identity: iTF_00911299;
80% Identity: -