Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: -
Assembly: GCA_963978555.1
Location: OZ021710.1:608083-609648[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00042 0.064 14.9 4.0 1 21 103 123 103 125 0.95

2 15 0.00029 0.045 15.4 3.1 1 21 131 151 131 153 0.96

3 15 0.00034 0.052 15.2 5.0 1 21 159 179 159 181 0.95

4 15 9.8e-05 0.015 16.8 2.6 1 21 187 207 187 209 0.96

5 15 0.0011 0.17 13.6 8.5 1 21 215 235 215 237 0.96

6 15 0.00028 0.043 15.4 9.6 1 23 243 265 243 265 0.99

7 15 3.6e-06 0.00055 21.4 1.0 1 23 271 293 271 293 0.97

8 15 4.7e-07 7.3e-05 24.2 2.1 1 23 299 321 299 321 0.98

9 15 0.001 0.16 13.7 2.9 2 21 328 347 327 349 0.94

10 15 5.9e-06 0.00091 20.7 2.5 1 23 355 377 355 377 0.97

11 15 0.00021 0.032 15.8 3.6 1 21 383 403 383 405 0.96

12 15 0.016 2.5 9.9 8.0 1 21 411 431 411 433 0.95

13 15 9.8e-08 1.5e-05 26.3 1.9 1 23 438 460 438 460 0.99

14 15 2.4e-07 3.6e-05 25.1 4.6 1 21 466 486 466 488 0.96

15 15 8.8e-07 0.00014 23.3 3.2 1 23 494 517 494 517 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00042	0.064	14.9	4.0	1	21	103	123	103	125	0.95
2	15	0.00029	0.045	15.4	3.1	1	21	131	151	131	153	0.96
3	15	0.00034	0.052	15.2	5.0	1	21	159	179	159	181	0.95
4	15	9.8e-05	0.015	16.8	2.6	1	21	187	207	187	209	0.96
5	15	0.0011	0.17	13.6	8.5	1	21	215	235	215	237	0.96
6	15	0.00028	0.043	15.4	9.6	1	23	243	265	243	265	0.99
7	15	3.6e-06	0.00055	21.4	1.0	1	23	271	293	271	293	0.97
8	15	4.7e-07	7.3e-05	24.2	2.1	1	23	299	321	299	321	0.98
9	15	0.001	0.16	13.7	2.9	2	21	328	347	327	349	0.94
10	15	5.9e-06	0.00091	20.7	2.5	1	23	355	377	355	377	0.97
11	15	0.00021	0.032	15.8	3.6	1	21	383	403	383	405	0.96
12	15	0.016	2.5	9.9	8.0	1	21	411	431	411	433	0.95
13	15	9.8e-08	1.5e-05	26.3	1.9	1	23	438	460	438	460	0.99
14	15	2.4e-07	3.6e-05	25.1	4.6	1	21	466	486	466	488	0.96
15	15	8.8e-07	0.00014	23.3	3.2	1	23	494	517	494	517	0.97

Sequence Information

Coding Sequence: ATGTTTACGAAGCGAGTAGAATTTTCTTGGCACTTTTTAGCCAGTCACCATTTGAAAGGAAGGAAAGTATATAAGACTAAAATCAACCAAAAACAAATCAACAATACTAAAACTACAATTAGTTGTAATACAATTCCTATTGATCGTAATATAGTTGTAaaagaagaaattgaaatagTCAAACAGGAGACGGTTCAGTTAAAGAATGTTGATGATTTTAAATCATGCTTTAATGAGAATATAAGTAACTATATTAATACTGAAAACTGTGATACAGATAAGAAGACTTCATCAGGGCAAAAACCATTTGAATGTGTAGTTTGCTCGAAATCCTTTATCAGCTGTCGAGATTTAGAAAGACACATACGTTGTCACACAGGGGAGAAACCATACAAATGCGAAGTTTGTTTGAAGTCATTTAGAGTAAAGCGTGGTTTAACTCTGCATATGCGATGTCACACAGGGGAAAAACCATACGAATGTAAAGTTTGCTCGAAATCTTTTATAAGCTGTCGAGATTTAGAAAGGCATGTACGTTGTCACACAggtgaaaaaccattcaaatgcgAAGTCTGTTTGAAATCGTTTAGAGTGAAGGGTACTTTGAATATACACATGCGATGTCACACAGGTGAAAAACCGTATGAATGTAAAGTTTGTTTAAAATCCTTTAAAAAATGCGATCATTTGAAAATACACATGCGTTGTCACACGGGGGAGAAGCCGTTCAAGTGTGACATTTGCTTGAAATGTTTTTCACAGAAATGTCATTTCAATATACATTTGCGCAGCCACCAAAGAAAAATGTCGTTCGTATGCAAAATTTGCTCAAAGTCGTTTAGAGAAGAAGAATCTTTAATTAGACACATGTATTATCATACAGGGGAAAAACCGTTTAAATGCGATATTTGCTTGAAAAGTTTTTCACGcaaatataatttcaatgtaCATTTGCGCGGCCACAATGGAGAAAATCCGTTGAAGTGTGAAGTTTGCTTCAAATCATTCGGAATAAAGGAAACTTTGACAAGACATATGCGCTGTCATACAGgggaaaaaccattcaaatgtgacatttgttTAAAACGTTTTTCGCAGAAAGGTCATTTAACTGTACATTTGTTCATTCACCAAGGAGAAGCGCCGTTCAAATGCGAAGTTTGTTCGAAATCATTTAGTGTGAAGAATAGACTGAATATACACATGCGGTGTCACACAGGGGAAAAACCATATGAGTGTAAAGTTTGTTTTGAATCTTTTACGAGTTGTATACATTTCAATAAACATATGCTTTGTCACACAGAAAACCCGTTCAAGTGTGAAATTTGCTCGAAATTTTTTACCGAAAACAGTCAATTAGTTAGACACATGCGTTCCCATACGGGGGAAAAGCCATATGAATGTAAAGTTTGTTCAAAAACTTTTACACAGTCTTCTAATTTGAATAGACATATGCGTTGTCACACAGGAGTAAAACCATACAAATGTGAAGTTTGTTCGAAATCTTTTAGTGATAAATGCAATTTAAATAACCACATTATACGTTATCATGAGGACGAAAAATAG
Protein Sequence: MFTKRVEFSWHFLASHHLKGRKVYKTKINQKQINNTKTTISCNTIPIDRNIVVKEEIEIVKQETVQLKNVDDFKSCFNENISNYINTENCDTDKKTSSGQKPFECVVCSKSFISCRDLERHIRCHTGEKPYKCEVCLKSFRVKRGLTLHMRCHTGEKPYECKVCSKSFISCRDLERHVRCHTGEKPFKCEVCLKSFRVKGTLNIHMRCHTGEKPYECKVCLKSFKKCDHLKIHMRCHTGEKPFKCDICLKCFSQKCHFNIHLRSHQRKMSFVCKICSKSFREEESLIRHMYYHTGEKPFKCDICLKSFSRKYNFNVHLRGHNGENPLKCEVCFKSFGIKETLTRHMRCHTGEKPFKCDICLKRFSQKGHLTVHLFIHQGEAPFKCEVCSKSFSVKNRLNIHMRCHTGEKPYECKVCFESFTSCIHFNKHMLCHTENPFKCEICSKFFTENSQLVRHMRSHTGEKPYECKVCSKTFTQSSNLNRHMRCHTGVKPYKCEVCSKSFSDKCNLNNHIIRYHEDEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -