Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: -
Assembly: GCA_963978555.1
Location: OZ021711.1:17431916-17437789[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7.2e-05 0.011 17.3 2.0 1 23 410 432 410 432 0.96

2 18 2.6e-05 0.0041 18.6 1.8 1 20 438 457 438 460 0.94

3 18 6.2e-05 0.0096 17.5 1.6 1 23 466 488 466 488 0.98

4 18 0.00054 0.084 14.5 4.3 1 21 494 514 494 516 0.94

5 18 1.2e-05 0.0019 19.7 5.7 1 23 522 544 522 544 0.99

6 18 2.5e-05 0.0038 18.7 5.3 1 23 550 572 550 572 0.97

7 18 3.5e-05 0.0054 18.3 8.5 1 23 578 600 578 600 0.97

8 18 9.7e-08 1.5e-05 26.3 2.7 1 23 606 628 606 628 0.98

9 18 7.2e-05 0.011 17.3 6.7 1 23 634 656 634 656 0.97

10 18 9.7e-05 0.015 16.9 4.8 1 23 662 684 662 684 0.97

11 18 1.6e-06 0.00025 22.5 3.0 1 23 690 712 690 712 0.98

12 18 3.3e-05 0.0051 18.3 8.0 1 23 718 740 718 740 0.98

13 18 2.8e-05 0.0043 18.6 9.1 1 23 746 768 746 768 0.98

14 18 1.7e-05 0.0026 19.3 7.7 1 23 774 796 774 796 0.98

15 18 1e-05 0.0016 19.9 7.1 1 23 802 824 802 824 0.97

16 18 6.2e-05 0.0096 17.5 0.4 1 23 830 852 830 852 0.97

17 18 0.087 13 7.6 5.0 1 23 862 884 862 884 0.98

18 18 1.9e-07 2.9e-05 25.4 0.5 1 23 890 912 890 912 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7.2e-05	0.011	17.3	2.0	1	23	410	432	410	432	0.96
2	18	2.6e-05	0.0041	18.6	1.8	1	20	438	457	438	460	0.94
3	18	6.2e-05	0.0096	17.5	1.6	1	23	466	488	466	488	0.98
4	18	0.00054	0.084	14.5	4.3	1	21	494	514	494	516	0.94
5	18	1.2e-05	0.0019	19.7	5.7	1	23	522	544	522	544	0.99
6	18	2.5e-05	0.0038	18.7	5.3	1	23	550	572	550	572	0.97
7	18	3.5e-05	0.0054	18.3	8.5	1	23	578	600	578	600	0.97
8	18	9.7e-08	1.5e-05	26.3	2.7	1	23	606	628	606	628	0.98
9	18	7.2e-05	0.011	17.3	6.7	1	23	634	656	634	656	0.97
10	18	9.7e-05	0.015	16.9	4.8	1	23	662	684	662	684	0.97
11	18	1.6e-06	0.00025	22.5	3.0	1	23	690	712	690	712	0.98
12	18	3.3e-05	0.0051	18.3	8.0	1	23	718	740	718	740	0.98
13	18	2.8e-05	0.0043	18.6	9.1	1	23	746	768	746	768	0.98
14	18	1.7e-05	0.0026	19.3	7.7	1	23	774	796	774	796	0.98
15	18	1e-05	0.0016	19.9	7.1	1	23	802	824	802	824	0.97
16	18	6.2e-05	0.0096	17.5	0.4	1	23	830	852	830	852	0.97
17	18	0.087	13	7.6	5.0	1	23	862	884	862	884	0.98
18	18	1.9e-07	2.9e-05	25.4	0.5	1	23	890	912	890	912	0.97

Sequence Information

Coding Sequence: ATGAATTCTGATAATCAGAATGTTTTACCAACAGTGCACGGAACGTCTGATggAGCTTCTCATAGAAGTCCTGCAACTACTTCTGTACCCACCGATTTGAGAGTAAATACCACTGCCCTAAATGCTGTTGCACTGAGTAATGTAGCTAAATACTGGGTGTTGACAAATTTGCTTCCAGGACCAATACCACAAGTATCAGTTTATGGATTGCCAGGTGCTACTAGAGAGAGCCAAGGAAAAATCTCTCAAgatacTGTTCTAAGTCAGCACGGCTTTCTCCAAACTGACCCTCTGCTAATTCAACAGCATACCCAAATACCAGTGAGCATAGCAACATCACAAGGGAATCTTGGATTGTCAGCAAGTGCTGTACATCTTGAGAATGCCCTTAATGTAGTAGCTAGTCATCATTCCAATGAAAATGTATCAGCACAGAATATAAATCAGTTATCCAGGGATATGAGGATCAATCATTCCCAACATCAAAATCAGCAATCACAACAGCATCACCAGCAGCAGCAACAACATCAACAACAAAATTCTCAAAATCTAGTTCAAGTACAAGTACAGGATAATTTGGTGTCAGTGATAGAGGATACAAAGGATCAAAAAGATATATCAGCCCAACTGCAGGCAGCGCAATTGCAACTTTCTGAAAACAATATAGGACAGCAATCTTTGACTGTTCAGCAGTTACAACATATGCAGGTTCAACAAGTTTTGGAAAATGTGGTACGAATGGAAAATTCTGTAGAAAACAACCAGAACCAATCAAATAATGATTCTCATCAGGATTCTCTTTCTGAAACGATACAAATAGTAAAAGAGGAAAAATCCTTTCCTAGCTGTAAGTTGGTATCTGGCACCCAATTCGGGTTGCAGGATCTTAAAAGCAACATGATGGATGTAAGGACTGCTGATGGTAGCATTGTTAAAATACAGACAAACATGCAGGAACAGGAGCTGGTGAAAACCTTGGGATTGGATATCGTCAATAACATGTATAAAGTTAACGTGGATGATTTAAACCAGTTGTTGGCATATCAcgagatttttggaaaattgcAGGGTAATCAAGgaACAGATTTATCCAACAGCAGTCAAAACGTATCGCAAAACTCGAACAActtgaacatttcaaattcaaatataataatCACCAAAGACGAACAAGAACCGTCCACCAGTAACATAACCAACGAAAACCTACCGACTGTAGTCCCGACGCATGCGTGCGACTTATGCGGTAAAATGTTCCAGTATCGTTACCAATTAATTGTACACAGACGTTACCATACCGAACGTAAACCCTTCACGTGCCAAGTGTGCGGCAAAGCCTTTACCAATGCTCAGGAACTCACGCGTCACGGAAAGTGCCATTTGGGAGGAAGCATGTTCACTTGCTCCGTTTGTTTTCACGTATTTGCAAACGATGCTTCGTTGGAGAGGCACATGAAGAGGCATTCTACGGATAAACCGTACGCTTGTAGTATTTGTTCGAAAACTTTTGCGCGAAAAGAGCATTTGGATAATCATACGAGATGTCATACAGGGGAAACGCCATATAGGTGTCAGTATTGTACAAAAACGTTTACAAGGAAGGAGCACATGGTGAACCACGTTAGGAAACATACAGGGGAAACGCCGCACAGatgtgaaatatgtaaaaaatcatttactCGAAAGGAGCATTTTATGAATCACGTTATGTGGCATACTGGGGAAACTCCTCATCATTGTACGTTTTGTGGGAAAAAATATACTAGGAAAGAACATTTAGCTAATCATATGAGAAGCCATACTCACGATACTCCGTTTAGATGTGAAATTTGCGGTAAATCTTTCACGCGGAAAGAACATTTTACGAATCACATAATGTGGCATACGGGCGAAACCCCTCATCGTTGCGATTTTTGTTCGAAAACTTTCACTCGAAAAGAGCATCTTTTAAATCACGTGCGGCAGCACACAGGGGAATCGCCGCATCGTTGTGGATTCTGCGCGAAATCGTTTACCAGAAAAGAGCATTTAATTAATCACGTTAGACAACACACAGgagAAACTCCGTTTCGCTGTAACTTCTGTCCCAAAGCTTTTACAAGAAAGGATCATCTAGTGAACCACGTTCGTCAGCATACCGGAGAATCTCCTCACAAATGCACGTTTTGTACAAAATCTTTTACTAGAAAAGAACATTTGAACAACCATGTCAGACAACATACTGGAGAATCTCCTCATCGGTGCCATTTTTGCTCCAAGTCTTTTACAAGGAAGGAACATTTAACGAATCACGTCCGAATACATACAGGCGAATCACCTCATCGTTGTGAATTTTGCCAAAAAACCTTCACCAGAAAAGAGCATCTTACCAATCACCTTCGACAACACACCGGAGAAACCCCACATTGCTGTAATATTTGTTCCAAGCCTTTCACTAGAAAAGAACACCTGGTAAATCACATGCGATCTCATACCGGAGAAAGACCGTTCGCTTGTAACGAATGCGGAAAATCCTTCCCGCTCAAAGGAAATCTTTTATTCCACCAAAGATCTCACAATAAAGGTGCTAATGCAGAACGACCCTTTAGgtgtGACCTTTGCGAGAAAGATTTCATGTGTAAAGGACATTTAGTGTCTCATCGACGGTCGCATATGAGCGAACGACCGCACGTGTGTCCGGATTGCGGCAAGGCTTTTGTGGAAAAAGGAAACTTGCTGCGACATCTTAAAAAACACACCGCAGATAATGCTCAGGCGCAATCTAATAACCAAATACACCAACAAGcTAACGCATCGCAAAATACTCAACCCGCAGTAACCACGCCAAATATTCAAATCCCGCAAGTGCACGTTAGCCAAGGCCAGCAATTGCAACAGTCCTCCAACGCTAACATAGTCCAATCTTCGCATATGCAAATGCCACCTCCTAGCAGCCATTCTGTTATTCCCACCGCGAATACTAACGTACTGACCTATTAG
Protein Sequence: MNSDNQNVLPTVHGTSDGASHRSPATTSVPTDLRVNTTALNAVALSNVAKYWVLTNLLPGPIPQVSVYGLPGATRESQGKISQDTVLSQHGFLQTDPLLIQQHTQIPVSIATSQGNLGLSASAVHLENALNVVASHHSNENVSAQNINQLSRDMRINHSQHQNQQSQQHHQQQQQHQQQNSQNLVQVQVQDNLVSVIEDTKDQKDISAQLQAAQLQLSENNIGQQSLTVQQLQHMQVQQVLENVVRMENSVENNQNQSNNDSHQDSLSETIQIVKEEKSFPSCKLVSGTQFGLQDLKSNMMDVRTADGSIVKIQTNMQEQELVKTLGLDIVNNMYKVNVDDLNQLLAYHEIFGKLQGNQGTDLSNSSQNVSQNSNNLNISNSNIIITKDEQEPSTSNITNENLPTVVPTHACDLCGKMFQYRYQLIVHRRYHTERKPFTCQVCGKAFTNAQELTRHGKCHLGGSMFTCSVCFHVFANDASLERHMKRHSTDKPYACSICSKTFARKEHLDNHTRCHTGETPYRCQYCTKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTFCGKKYTRKEHLANHMRSHTHDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCAKSFTRKEHLINHVRQHTGETPFRCNFCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNICSKPFTRKEHLVNHMRSHTGERPFACNECGKSFPLKGNLLFHQRSHNKGANAERPFRCDLCEKDFMCKGHLVSHRRSHMSERPHVCPDCGKAFVEKGNLLRHLKKHTADNAQAQSNNQIHQQANASQNTQPAVTTPNIQIPQVHVSQGQQLQQSSNANIVQSSHMQMPPPSSHSVIPTANTNVLTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056849;
90% Identity: iTF_00459143;
80% Identity: -