Gnym037056.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021719.1:8385148-8387966[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.48 74 5.2 3.3 1 23 128 150 128 152 0.79 2 19 0.94 1.4e+02 4.3 0.1 2 23 157 178 156 178 0.94 3 19 3.9e-06 0.0006 21.3 3.5 2 23 241 262 240 262 0.97 4 19 5.2e-05 0.008 17.7 3.9 1 23 268 290 268 290 0.99 5 19 0.00096 0.15 13.7 3.1 1 23 296 318 296 318 0.99 6 19 0.00011 0.017 16.7 3.6 1 23 324 346 324 346 0.98 7 19 1.6e-05 0.0025 19.3 0.4 1 23 352 374 352 374 0.99 8 19 3.4e-05 0.0053 18.3 0.4 3 23 382 402 380 402 0.96 9 19 0.00053 0.081 14.6 0.3 1 23 408 430 408 430 0.98 10 19 0.00028 0.043 15.4 4.2 1 23 436 458 436 458 0.98 11 19 2.7e-09 4.2e-07 31.2 1.1 1 23 464 486 464 486 0.98 12 19 5.1e-07 7.8e-05 24.0 1.3 1 23 492 514 492 514 0.98 13 19 3.1e-06 0.00048 21.6 0.8 1 23 520 542 520 542 0.97 14 19 1.9e-05 0.003 19.1 2.6 1 23 548 570 548 570 0.97 15 19 0.00011 0.016 16.8 0.5 1 23 576 598 576 598 0.99 16 19 8.3e-06 0.0013 20.2 0.8 1 23 604 626 604 626 0.96 17 19 2.7e-06 0.00042 21.7 0.8 1 23 632 654 632 654 0.98 18 19 3.1e-06 0.00048 21.6 5.6 1 23 660 682 660 682 0.99 19 19 2e-06 0.00031 22.2 3.7 1 23 688 710 688 710 0.97
Sequence Information
- Coding Sequence
- ATGGATCCTTTAAACTTTGTATGTGTTCCCAAAAAAGAACTAAAAGATGAGTTTGATGCTGAAGCATCAGATGTGAAAGTTGAAGTATCCATCGAAaccgaagatttaaaacaagaCTATATTCCAATTCCTTCTATAAAAGTGGAGAGTGAACAGCAGAAATATATGGAGGCAatgaaagtaataaatattcTAGATCCAGATATCCTTAAAGTGAAACTTGAACCCGAAGATGTACCAGATATAATTGATACAAATAGTACCTATTCCGAAAATTTTGTATGGAATGCTGGTCTTCTACCAGGCCCATCGAGTTATAAACTGACCACTAATCGTCAATGTGCATTAAAAACTACAAAGatcaaaaataagaaaaaacgaTATAAATGCCCTATTTGTGGAAAAGGTCATTTTACTGTAGCTTCAAGTAGACAACATATGCAATCTCATTTTAGATCAAGCTGTATTCCTTGTTATTTGTGTGGAGAATTATCTATCTCAAGCTATGAATATTTGGATCACTTTAAAAAACACTCAACCAAACAAAAGTATTCACCAGCTCAAATcaagtatttaaataaaatggcaTCCAGTAATTCCCAAGATAATGTATGGGCCAATGTAcaatataaacactttttggaTTACACTGACTCGAAGGATGATGATGATAGTAAAGAGATTGATTGTGGTGATTTGAAAAAAGTAGATGGCAAATGGCAGTGTCACTTgtgttataaacaatttattaggAGATCATACTTGAAACAGCATATGAGAATACATACTGGAGAAAAACCTTATAAATGCGAACTTTGCTCAAAACTATTCATGACCAAATCTCATTTGAGATATCACATTAAAATCCATACTGGCGAAAAACCGTTCAAATGTGATTTCTGTTCGTTGGAATGCATCAGTAAATCACAGCTAACAATGCATACGAGAATTCATACAGGCGAAAAACCTTACACATGTCAAATATGCTCCAAAGAATTCATGACAACATCTCACCTAAGACAACATTCAAAAGTTCACACTGGAGAGAAACCCtttaaatgtgaaatttgtttgaagGGTTTTGGTCAGAAATATTCTTTAGTCATCCACTTAAGGAGTCATTCTGGAGAAAAACCTTATGGTTGCGATATTTGTCAAAAGcgtttttctcaaaagaaaAACATGATTCTTCACATGGGAATCCATTCTGACGAACGACCGTACCAATGTATCATATGCGCCAAAGGATACAGTCAAGCAACTCTGCTGGATCGTCATATGAAGACACACGCTGCAGACAAACCGTTTAAATGCGACACCTGCTTGAAACAATTTTCCACGAGATCACATTTCATCGAACATTCCAGAATTCATTCAGGTGAAAGACCATTCGTATGTCCAATTTGTTCTAAATCATTCACTCAGCAGTCAAGTTTACGCAATCATATGAACACACACAAGACCGAAAGACCTTTCAAATGTGAAATATGCCAAAAAGGGTTCACTCAAAGATCGAGTTTGAACTTACACATGAGTAATCACACGCAGGTAAAACcttttaaatgtgaaatatgTCCGAAAAGATTTGCTCGTATGTCAGTGCTCAAACGTCATATGATATTCCATTCCGGCGAAAAGCcttttaaatgtgaaatttgctcgaaaaattTCAGCATATCTTCgcatttaaaacaacatttgGTAAGTCATACAGGGGAAAAGCCATTCAAATGCGAGTTTTGTCCGAAACGTTTCGCTCTTAAAGCCGGTATAACATTGCACATGAGAAGTCATTCTGGCGAAAGACCATATCAATGTATTCTTTGTCCTAGAAAATTCtctcaaaaatcaaatttaactgTCCACATACAAAATCACTCTAAAGAGGATAGATTCAAGTGTCGTATGTGTCCGGAAAAATTCACCAACATAGAAAACTTGAATCGGCATATGACCGTCCATACGGGGGAGCTGCCTTTTCAGTGCAATACTTGTTATAAACAGTTTTCTAAAAAAGCTCATTTAAGAGATCACATGAGAACTCATACAGGTGAAAAACCTTTTCATTGTGAATTGTGCAACAAGCGGTTTTCACAGAAATCGAGTTTAAACGTTCATATTAAAAATCACAGTCGCTAA
- Protein Sequence
- MDPLNFVCVPKKELKDEFDAEASDVKVEVSIETEDLKQDYIPIPSIKVESEQQKYMEAMKVINILDPDILKVKLEPEDVPDIIDTNSTYSENFVWNAGLLPGPSSYKLTTNRQCALKTTKIKNKKKRYKCPICGKGHFTVASSRQHMQSHFRSSCIPCYLCGELSISSYEYLDHFKKHSTKQKYSPAQIKYLNKMASSNSQDNVWANVQYKHFLDYTDSKDDDDSKEIDCGDLKKVDGKWQCHLCYKQFIRRSYLKQHMRIHTGEKPYKCELCSKLFMTKSHLRYHIKIHTGEKPFKCDFCSLECISKSQLTMHTRIHTGEKPYTCQICSKEFMTTSHLRQHSKVHTGEKPFKCEICLKGFGQKYSLVIHLRSHSGEKPYGCDICQKRFSQKKNMILHMGIHSDERPYQCIICAKGYSQATLLDRHMKTHAADKPFKCDTCLKQFSTRSHFIEHSRIHSGERPFVCPICSKSFTQQSSLRNHMNTHKTERPFKCEICQKGFTQRSSLNLHMSNHTQVKPFKCEICPKRFARMSVLKRHMIFHSGEKPFKCEICSKNFSISSHLKQHLVSHTGEKPFKCEFCPKRFALKAGITLHMRSHSGERPYQCILCPRKFSQKSNLTVHIQNHSKEDRFKCRMCPEKFTNIENLNRHMTVHTGELPFQCNTCYKQFSKKAHLRDHMRTHTGEKPFHCELCNKRFSQKSSLNVHIKNHSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911284;
- 90% Identity
- iTF_00911284;
- 80% Identity
- -