Gnym028688.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- Zfat
- Assembly
- GCA_963978555.1
- Location
- OZ021714.1:9457961-9474487[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 53 2.3 3.5e+02 3.1 0.5 3 23 22 42 21 42 0.93 2 53 1.5 2.3e+02 3.7 0.4 1 11 77 87 77 97 0.79 3 53 0.0003 0.047 15.3 1.7 1 23 105 128 105 128 0.95 4 53 0.3 46 5.9 2.5 1 23 139 162 139 162 0.91 5 53 0.00039 0.061 15.0 2.8 3 23 173 193 172 193 0.98 6 53 5.6e-05 0.0086 17.6 0.6 1 23 199 221 199 221 0.97 7 53 2.1e-05 0.0032 19.0 1.9 1 23 227 249 227 249 0.98 8 53 3.5e-05 0.0054 18.3 1.2 3 23 257 278 256 278 0.98 9 53 9.7 1.5e+03 1.1 0.1 2 23 322 343 321 343 0.83 10 53 1.7 2.6e+02 3.5 1.0 1 23 378 400 378 400 0.84 11 53 0.0001 0.016 16.8 0.8 1 23 406 429 406 429 0.97 12 53 9.2 1.4e+03 1.2 1.4 1 11 441 451 441 453 0.91 13 53 0.047 7.2 8.4 0.2 2 23 494 515 493 515 0.94 14 53 0.22 34 6.3 0.6 1 20 548 567 548 570 0.77 15 53 0.0013 0.19 13.4 2.0 1 23 576 599 576 599 0.97 16 53 0.36 55 5.6 2.5 2 23 619 641 618 641 0.87 17 53 0.0004 0.061 14.9 0.1 3 23 652 672 651 672 0.98 18 53 0.76 1.2e+02 4.6 0.3 2 16 726 740 725 747 0.84 19 53 1.7 2.7e+02 3.5 1.9 1 14 782 795 782 804 0.80 20 53 0.00022 0.035 15.7 1.5 1 23 810 833 810 833 0.95 21 53 2.4 3.7e+02 3.0 3.0 1 15 839 853 839 862 0.77 22 53 0.00012 0.018 16.6 0.1 3 23 873 893 872 893 0.98 23 53 0.83 1.3e+02 4.5 0.2 1 11 899 909 899 911 0.92 24 53 1.2 1.8e+02 4.0 0.4 2 16 989 1003 988 1010 0.85 25 53 2 3.1e+02 3.3 1.1 1 23 1045 1067 1045 1067 0.88 26 53 0.01 1.6 10.5 0.2 1 23 1073 1096 1073 1096 0.95 27 53 0.47 72 5.3 6.3 1 23 1102 1124 1102 1125 0.93 28 53 0.00013 0.02 16.5 0.1 3 23 1136 1156 1135 1156 0.98 29 53 0.00017 0.026 16.1 0.3 1 23 1162 1185 1162 1185 0.98 30 53 0.15 23 6.8 1.1 1 16 1191 1206 1191 1208 0.84 31 53 1.1 1.7e+02 4.1 0.4 2 16 1254 1268 1253 1275 0.85 32 53 0.23 35 6.2 0.6 1 23 1310 1332 1310 1332 0.88 33 53 0.0019 0.29 12.8 0.2 1 23 1338 1361 1338 1361 0.95 34 53 0.31 48 5.8 3.0 1 23 1367 1389 1367 1390 0.90 35 53 0.00012 0.018 16.6 0.1 3 23 1401 1421 1400 1421 0.98 36 53 0.81 1.3e+02 4.5 0.2 1 11 1427 1437 1427 1440 0.92 37 53 0.041 6.3 8.6 0.2 2 23 1517 1538 1516 1538 0.94 38 53 5.8 9e+02 1.8 2.1 1 23 1544 1567 1544 1567 0.91 39 53 1 1.6e+02 4.2 0.9 1 23 1573 1595 1573 1595 0.83 40 53 6.4e-05 0.0099 17.4 0.2 1 23 1601 1624 1601 1624 0.96 41 53 0.71 1.1e+02 4.7 4.6 1 23 1630 1652 1630 1653 0.90 42 53 0.00014 0.022 16.4 0.1 3 23 1664 1684 1663 1684 0.98 43 53 1.5 2.4e+02 3.7 1.0 1 12 1792 1803 1792 1805 0.91 44 53 1.2e-05 0.0019 19.7 3.2 1 23 1825 1847 1825 1847 0.96 45 53 5.2e-06 0.00081 20.9 3.8 1 23 1853 1875 1853 1875 0.98 46 53 0.00013 0.021 16.4 0.2 1 23 1880 1902 1880 1902 0.98 47 53 0.012 1.8 10.3 0.2 2 23 1909 1931 1909 1931 0.92 48 53 3.1e-05 0.0047 18.4 0.7 1 23 1936 1958 1936 1958 0.98 49 53 0.12 18 7.2 5.7 2 23 1969 1991 1968 1991 0.95 50 53 6.8e-05 0.01 17.4 1.4 1 23 1998 2020 1998 2020 0.98 51 53 6.3e-06 0.00097 20.6 0.5 2 23 2027 2048 2026 2048 0.97 52 53 6e-08 9.2e-06 27.0 0.4 1 23 2054 2076 2054 2076 0.98 53 53 0.00012 0.018 16.6 0.4 1 23 2082 2105 2082 2105 0.96
Sequence Information
- Coding Sequence
- atgtctaaaAAAGAATACGAATCATACAAAGTCGAACCTATGAAATTAGAAAACCCCTTGTTGTGCAAAATATGTAGGGTTTACTTCACCACCAACATTGAATACAGCTACCATTCTATTAATCATAATCGAGATGGGAATTTCGAATGTCATATGTGCGAGGGATACAGTAACAAAAAAAGATCCGCCATAGAAAAACATATAAGAGACCATGAaggaatattgaaatttaaatgtcGTGTATGCGGTAAGCAGTATAATGCATTGAAAGAGGCATACGAACACCAATTTTTCGATAATAAAAAAACGCCTTTCGAATGCGACATATGCGGGAAAAAATATCATTCTTCGTTTTCGTTGAAGAACCATAAGATTATAATTCATTACGAAGTAATTGGTCAAAAAGATGATAGGTTTGATTGCAAATTGTGTAACAAGCATTACAAAACCCCGGCTGGTAGATCTTATCATTATCTAATAAAACACAAAGATTTGATTGATAAAACTCCTATACTTTGTCAGATTTGCGGAATTGACTTTCATACAAAAAGGAATTTGAAAGCTCACATGCACGTACACACCGGAATTAAACCATTCTCTTGTCAATTGTGTACTAAAACATTCACACAATCAGGAGGGCTAAGTCAACATCAAGCGGTTCATAcaggagaaaaaaaattcacttgTGAATATTGTGGTAAAAAATTTCCTTTTCGTGCATCCTATAAAACTCATTTAAAAATACACACCGGAGAAAAACCTCATGGATGTTCACTGTGCGAAAAAACATTCATCACCAGGGGCAACTTGAGACTTCATATGAAAAAGTTCCATAAACTATCGAGGACTATTTTTGATGCAACAGTACCACAGAAAAGAAACAGTAGAGGTATCTTAGCTAAACTGTCCCAAGAAGAATTTGAAACGTATGTGGTTAAACCTATAAAGCTAGAAAACCCCCTGGAATGTAAAATATGTAACGCTTCCTATCTCAGTAACATTGATTTCGGTATCCATTCTATAACacacaatttaaaaggattttatGAATGTCACATGTGCGAGGGATACAGACATAGGAACAGAACGACGTTCGAAAAACATATAAGAGACCACGAAGGAGTAAGGAAATTCCAGTGTCCTGTGTGCAGGAAGCAATATAATATTCTGAAAGAGGCCTACGAACACCGATTCAGACACGAAAACAAAAAACCTTTCGAATGTGACATGTGCGGGAAGCAATTCTCAGCTTCCTATTCGttgaaatatcacaaaaatatgGCTCACTACGAAACTCTTACTGGTCAAAAACTGGATAAGTTCGATTGTAAATTGTGTAAAAAACAGTTCACTCTTTTCCAATCAACAGATCAACAAATACAATCAAAAGGTTGTGGTAAAAAAGGAATCCTTACGAGAATGTCTCAAGAGGAATACGATTCTTGCTTGGCCAAACCAATGAAACtagaaaatcctttgatttgtAATATTTGTAACACTTCGTACACTAGCAACATCGATTTCGGGGTCCATTCTTTAAAACACAAGCTTTTATACGAGTGCCATATGTGCGAAGGTTTCAGTCATGAAAATAAGACAGTGTTTAAAAAGCATATCAGAGATCACGAAGGGACGACGAAGTTCAAATGCCCCGTTTGCGAAAAACCGTTTCAAACTTTAAAAGTAGCTTACGAACATCGATTCATACATGAAAATAAGAAACCGTTCGAGTGCGACTTGTGCGGAAAACAATTTTTCGCTTCCTACTCGTTGAAGATacataaaaagaaaaaacatttcGACCTTCCTGACGATCGAAAAAAAGACAGACTTGGTCGTAAAATAGACAGACTTTATTGTAAATTGTGTAATAAGCAGTACAGGAATCGTTCTGGAATGTCTTACCATAATTTCCGAAAACATAAAGATGTGTACAGTTCAAATCCTGTTCTGTGCGATATTTGCGGACTGGATTTTCCGAATGGAAGTAAATTGAAACGTCACATGAACGGGCATATGGCAGATAAACAGTTCTCGAATCCTTTGACTCAAGCAGTAGAAAGAATATCCACGAAAGCATCAACAGGATGTGGCAGAAGGGGAATCCTACTTAAAATTTCTCAAGAAGAATACGATTCCATGTTGGTAAAACCAGTGAAACTAGAAAACCCGTTAATATGCATGATCTGTAACACTTCGTTCACTACCAATGTCGATTTTGGTTTCCATTCAGTGACACACAACGCAGAACACTTGTATAAATGTCATTTATGTGAAGGATACAGTCACAAGAATAAAACTGTATTCGAAAGACACGTAAGTGACCATGAAGGTATGAGAAAATTCAAATGTCGCGTATGCGAAAAACAGTTTCGATCTTTGAAAGTCGCGTACGAACATCggttttttcatgaaaataaaaaaccgtTTAAATGCGACGTATGCGGGAAACAATTTTTTGCTTCTTCTTCGTTGAAGAATCATAAAAATCTTAATCATTTCCGACAAAAGAGATTTGAATGTAAATTGTGTAATAAAAGTTATAAAGGGCATGATGGTATAGGATACCATAATTTTCGACACCACAAAGAATTACTAAATGCGAATCCAATACTTTGTGAAATTTGCGGAATGGATTTTCCAAATGAAAGTAAATTACAAAACCACATGGCTAAGCATACCAAAGAAAAACCGTACTCCTGCGAAATTTGTTCAAAACCCTTTTCACTGTCACCCAGAaatatctttgattgtctaagtcctaTCGGATCCTTCCAATGGTCTAACTGTAATTGTCCAACGTGTGTTAATGTAAATTGTTTTAGGAATCCTTTGACTCAAGCAGTCGAAAAAATATCCACGAAAGTATCAACAGGATGTGGCAAAAAAGGCGTCTTACTTAAAATTTCTAAAGAAGAATACGATTCCATGTTGGTAAAACCAGTGAAACTAGAAAACCCGTTGATATGCAAAATCTGTAATAGTTCGTTCACTACAAATGTCGAGTTTGGTTTCCATTCAGTGACACACAACGCAGAACACTTGTATAAATGTCATTTATGTGAAGGATACAGTCATAAGAATAAAACTGTATTCGAAAGACACGTAAATTACCATGAAGGTATGAGAAAATTCAAATGTCGCGTATGCGAAAAACAGTTTGGAAAAGTTAAAGCAGCGTACGAACACCAGTTTTCACATGAATATAAAAAACCGTTTGAATGCGGGGTATGCGGGAGACAACTCGCTTCTTTCTATTCGTTAAAGAATCATGAAAAATTAGTTCACCTCCATCAAAAGAAATTTGAATGCAAATTGTGTAATAAAAGTTATAAAGGATATGACGGTCTCTGTTACCATAATTTCCGACATCACAAAGAATTACTTAATACGAATCCAATACTTTGTGAAATTTGCGGAATGGATTTTCCAAATGAAAGTACATTACAGAGCCACATGGCTAAGCACACCAAAGAAAAACTGTACTCCTGCGAAATTTGttcgaaaaatttttcattggtTGGTACACTCAATCAACACATAAGAATTCAACATCAAGGAACGAAGCGTTACGTATGCAACTTTTGTGGTAAAAAATTTCCTTTCAGTAATGCCTATAGGAATCTTTTGACTCAAGCAGTCGTAAAAATATCTACGGAAGTATTAAGAGGATGTGGGAAAAGAGGCGTCCTACTTAAAATTTCTGAAGAAGAATACGATTCAATGTTGGTAAAACCAGTGAAACTAAAAACCCCGTTGATATGCAAAATCTGTAATAGTTCGTTCACTACTAATGTCGATTTTGGTTTCCATTCAGTGACACACAACGCAGAACACTTGTATAAATGTCATTTATGTGAAGGATACAGTCATAAGGATAAAACTGTATTCGAAAGACACGTAAATAACCATGAAGGTATGAGAAAATTCAAATGTCCTGTATGCGAAAAACAGTTTGGAAAAGTTAAAGCAGCGTACGAACACCAGTTTTCACATGAATATAAAAAACCGTTTGAGTGCGGGGTATGCGGGAGACAACTCGCTTCTTCCTATTCGTTAAAGAATCATGAAAAATTAGTTCACCTTGATCAAAAGAAATTTGAATGCAAATTGTGTAATAAAAGTTATAAAGGATATGACGGCCTCGGTTACCATAATTTCCGACACCACAAAGAATTACTAAATGCGAATCCAATACTTTGTGAAATTTGCGGAATGGATTTTCCAAATGAAAGTAAATTACAAAACCACATGGCTAAGCATACCAAAGAAAAACCGTACTCCTGCGAAATTTGTTCGAAACCCTTTTCACTGTTACACAGAaatatctttgattgtctaaatcCTACCGGATCCTTCCAATGGTCTAACTGTAACTGTGCAGCGTGTGCTAATCTAAATTGTTTCAGGAATCCTTTGACTCAGGCAGTAGAAAAAATATCCACGGATGTATCAAGAGGATGTGGGAAAAGAGGCGTCCTACTTAAAATTTCTAAAGAAGAATACGGTTCCATGTTGGTAAAACCAGTGAAACTAAAAACCCCGTTGATATGCAAAATCTGTAATAGTTCGTTCACTACTAATGTCGATTTTGGCCTCCATTCGATGGTACACAACGCAGAACCCCTGTATAAATGTCACTTGTGTGAGGGGTATAGTAGCAAAAATAGAACATTATTCGAAAGCCACGTAAGCGACCATGAaggtataaaaaaattcaaatgtcgTGTATGCGAAAAACAGTTTAGAGTTGTTAAAGCAGCGTACGAACACCAGTTtttacatgaaaatgaaaaaccgTTTAAATGCGACGTATGCGGAAAACAATTCGCAGCTTCCTATTCGTTGAAGAATCATGAAAATATAGTTCATCTCGATCAAAAGAAATTTGAATGCAAGTTGTGTAATAAAAGTTACAAAGGACATGACGGTCTAGGTTACCATAATTTCCGACATCACAAAGAATTACTTAATGCGAATCCAAGACTTTGTGAAATTTGCGGAATTGATTTTCCGAATGAAAGTAAATTACAAAACCACATGGCTAAGCATGCCAAAGATAAACCGAATACTTTAACTCAAGTAGTAGAAAATACATCCTCGAAAGTATCAACAGGATGTGGCAGAAGAGGCATCCTTCTTAAAATATCTCAAGAAGAATACGATTCAATGTTGGTAAAACCAGTGAAACTAGAAAACCCGTTGATATGCATAATCTGTAATAGTTCGTTCACTACCAATGTCGATTTTGGTTTCCATTCAGTGACACACAACGCAGAACACttgtataaatttcatttatgtGAAGGATACAGTCATAAGAATAAAACTGTATTCGAAAGACACGTAAGTGACCATGAAGGTATGAGAAAATTCAAATGTCGCGTATGCGAAAAACAGTTTCGATCTTTAAAAGTCGCggATACGTCTCACCTCAAAGTGGAATTACTAGAAGATAATGAAACCAATCTCCACTTCTGCGACATTTGCGGGAAGATATtcgaaaacaaaaagaaattgaGAAAACACCAAATCACTCACAGTCAAACCCGCCCTTATGCCTGTACCATTTGCAAAAAATCCTTCCGAAGAAAACACGAAGTTACCAGCCACATGAACACCCACAACGGCGCAACATACGCGTGCGAAATTTGTTCCAAAGTACTCAAATCCAAAGGATCCTTGAACATCCATGTAAAAAGGCATTTGAAAGAATTCATAGCGAAATGCGAAGTATGCGGTCAAGGTTTCGTCACCAATCAAGAATACCAATATCATGTGGGATCGAAACACGGTAACGCTACGTATATCTGTAACATCTGCGGTCGAAGTTGCTATGACAAAGCAGCCTTACAAGGCCATATAAAACGTCATAAAACGGGCTACGTATCGAATTCTAACATTAAATGCGACATTTGTCACAAAACTTTCCTACAGGAACGCTATTTGCGTCAACACTATCATCGCAAACACAAAGATGGTGGTCAAGCTTTCGTTTGCGATCATTGCGGGAAGAAGGTGAATTCGAAACGTAGTCTTAGAGATCATCTTTTAATCCATCAAGGTTTAAAACCGATTGAATGTAAAGAGTGCGGTAAAGGTTTTGCGTTAAGAACCACTCTTAAGTTACATATGCGTACCCATACCGGAGATAGGCCGTATGAGTGTCCGGATTGTGGAAAGTCTTTTACTCAAAGAACACCGTTGACGGTACACATGAGGTACCATAGCGGCGAACGGCCTTATAACTGCTCGATTTGCAACACTGGTTTTGTTAGCAAAGGGGCTTTGACTATAcatcaaaaaaataaacatagaACTGCTTAA
- Protein Sequence
- MSKKEYESYKVEPMKLENPLLCKICRVYFTTNIEYSYHSINHNRDGNFECHMCEGYSNKKRSAIEKHIRDHEGILKFKCRVCGKQYNALKEAYEHQFFDNKKTPFECDICGKKYHSSFSLKNHKIIIHYEVIGQKDDRFDCKLCNKHYKTPAGRSYHYLIKHKDLIDKTPILCQICGIDFHTKRNLKAHMHVHTGIKPFSCQLCTKTFTQSGGLSQHQAVHTGEKKFTCEYCGKKFPFRASYKTHLKIHTGEKPHGCSLCEKTFITRGNLRLHMKKFHKLSRTIFDATVPQKRNSRGILAKLSQEEFETYVVKPIKLENPLECKICNASYLSNIDFGIHSITHNLKGFYECHMCEGYRHRNRTTFEKHIRDHEGVRKFQCPVCRKQYNILKEAYEHRFRHENKKPFECDMCGKQFSASYSLKYHKNMAHYETLTGQKLDKFDCKLCKKQFTLFQSTDQQIQSKGCGKKGILTRMSQEEYDSCLAKPMKLENPLICNICNTSYTSNIDFGVHSLKHKLLYECHMCEGFSHENKTVFKKHIRDHEGTTKFKCPVCEKPFQTLKVAYEHRFIHENKKPFECDLCGKQFFASYSLKIHKKKKHFDLPDDRKKDRLGRKIDRLYCKLCNKQYRNRSGMSYHNFRKHKDVYSSNPVLCDICGLDFPNGSKLKRHMNGHMADKQFSNPLTQAVERISTKASTGCGRRGILLKISQEEYDSMLVKPVKLENPLICMICNTSFTTNVDFGFHSVTHNAEHLYKCHLCEGYSHKNKTVFERHVSDHEGMRKFKCRVCEKQFRSLKVAYEHRFFHENKKPFKCDVCGKQFFASSSLKNHKNLNHFRQKRFECKLCNKSYKGHDGIGYHNFRHHKELLNANPILCEICGMDFPNESKLQNHMAKHTKEKPYSCEICSKPFSLSPRNIFDCLSPIGSFQWSNCNCPTCVNVNCFRNPLTQAVEKISTKVSTGCGKKGVLLKISKEEYDSMLVKPVKLENPLICKICNSSFTTNVEFGFHSVTHNAEHLYKCHLCEGYSHKNKTVFERHVNYHEGMRKFKCRVCEKQFGKVKAAYEHQFSHEYKKPFECGVCGRQLASFYSLKNHEKLVHLHQKKFECKLCNKSYKGYDGLCYHNFRHHKELLNTNPILCEICGMDFPNESTLQSHMAKHTKEKLYSCEICSKNFSLVGTLNQHIRIQHQGTKRYVCNFCGKKFPFSNAYRNLLTQAVVKISTEVLRGCGKRGVLLKISEEEYDSMLVKPVKLKTPLICKICNSSFTTNVDFGFHSVTHNAEHLYKCHLCEGYSHKDKTVFERHVNNHEGMRKFKCPVCEKQFGKVKAAYEHQFSHEYKKPFECGVCGRQLASSYSLKNHEKLVHLDQKKFECKLCNKSYKGYDGLGYHNFRHHKELLNANPILCEICGMDFPNESKLQNHMAKHTKEKPYSCEICSKPFSLLHRNIFDCLNPTGSFQWSNCNCAACANLNCFRNPLTQAVEKISTDVSRGCGKRGVLLKISKEEYGSMLVKPVKLKTPLICKICNSSFTTNVDFGLHSMVHNAEPLYKCHLCEGYSSKNRTLFESHVSDHEGIKKFKCRVCEKQFRVVKAAYEHQFLHENEKPFKCDVCGKQFAASYSLKNHENIVHLDQKKFECKLCNKSYKGHDGLGYHNFRHHKELLNANPRLCEICGIDFPNESKLQNHMAKHAKDKPNTLTQVVENTSSKVSTGCGRRGILLKISQEEYDSMLVKPVKLENPLICIICNSSFTTNVDFGFHSVTHNAEHLYKFHLCEGYSHKNKTVFERHVSDHEGMRKFKCRVCEKQFRSLKVADTSHLKVELLEDNETNLHFCDICGKIFENKKKLRKHQITHSQTRPYACTICKKSFRRKHEVTSHMNTHNGATYACEICSKVLKSKGSLNIHVKRHLKEFIAKCEVCGQGFVTNQEYQYHVGSKHGNATYICNICGRSCYDKAALQGHIKRHKTGYVSNSNIKCDICHKTFLQERYLRQHYHRKHKDGGQAFVCDHCGKKVNSKRSLRDHLLIHQGLKPIECKECGKGFALRTTLKLHMRTHTGDRPYECPDCGKSFTQRTPLTVHMRYHSGERPYNCSICNTGFVSKGALTIHQKNKHRTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -