Gnym034697.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021718.1:2229724-2231288[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1 9.4e+02 1.1 0.0 17 26 51 60 47 69 0.90 2 8 1.8 1.7e+03 0.3 0.1 13 30 138 155 134 162 0.76 3 8 0.0002 0.19 12.9 1.3 19 39 222 239 215 243 0.87 4 8 0.91 8.5e+02 1.2 1.0 18 39 249 267 245 271 0.77 5 8 0.12 1.1e+02 4.0 4.4 17 41 276 297 266 299 0.85 6 8 0.88 8.2e+02 1.3 1.3 18 29 305 316 298 328 0.78 7 8 0.0001 0.095 13.9 0.2 18 39 333 351 327 355 0.91 8 8 0.00043 0.4 11.9 1.8 16 34 359 377 350 382 0.78
Sequence Information
- Coding Sequence
- ATGGGTcccaatattttatataaagatTTCCCAAAAATTTGTCGATTGTGTCTAGCCCATGGAAATTTATTACCAATAATGGAACTAAAAAAACTGGAATTCATCAAATCCATTATAAATATAAagCTTGACGAAGATAATCTACCAGAAAATGTGTGCCTGAAATGTGTCAAACAATTAGATGATATGTTAAggtttataaaaaattgtaaaagtagTGAAAATACTCTAATGGAAGTATTAAGAAAACTAGAACAAAAGTCAACCAACGTAAAACAAGAGGAAGAAACTACGAATAGTTGTGATGATGACATAAAAGATGAAGAAGATAGTATTGACAATGAGTTTTTCCTAAAGGGAGTTAAACAAGAAATTGTTGAGCTTGAACCTGATATTGTCTTACAGaaaaataaaGATACACCTTTGGTCTGCGAGAACTGTAGTGAAAGTTTCTCTTCTTCAGAAGGCCTACAtgaacattataaaatatttaccaaCTGCCGTCCAAAAGAGCTCTTATCATCTAAAAAAGACATTTGTAATATTgttgattatttgaaaaaaccaaAACAGCGAAGAgggaaaaagaaaataaaagagGAGAGTGACGGAGAACCAGAGTATGTTAAagggaaaaaattgaaaggaaAAAGAAGGTTTTTGTGcaatttttgtggaaaaaattatACTAGAAAAAATGGACTGGAGAGACACATTCTAAGTCATTcaggtaTCAAACCTTTTGAGTGCAAAGAATGTGGTAAAAGTTACATAACCAAGGATACTCTAAAAACTCATCTATTAACCCATACAGGCATTAAAGCATACAAATGTACAGTTTGTCAGAAATCATTCACTCAGTCAAGTCATCTGAGCTATCATATGAGGAGACACGCAGGCGAGAAACCACACAGGTGCACATATTGTAGCAAAGCCTTTTTATCGAGCTACCACTTGGAAAGACACAAATTAATGCACACAGGCGTTAAACCATACGAGTGCAATTTATGTGGAAAACAATTTGTCCGCAGTACGACCCTTCGAGACCATCTATTGATCCACAGCGGAGAAAAACCGTTCCAATGTCAGCATTGCGGGAAACAGTTTAATCGAAAACAATCTTTAACTAACCACGTTTTAGTACATACAGGCGGGAAAAATAGCaatagtagttcaaatgtatcgTTAGGTGTGAATATGGTTTCTAGTGATAATAGTTTTAAGTatatgaatgaatttccagTTAATCATTTGTTAGCTGGAGATGTACCACCGTATTTGTCTAATTCCACAGATATTAAGCAAACTGGAGTAGACGCGTTTCTTCACAATTCCATAGAAATGAAACAGTCGGAAAGTTCAGCTAGTTTGCACGGCACGTCGTGA
- Protein Sequence
- MGPNILYKDFPKICRLCLAHGNLLPIMELKKLEFIKSIINIKLDEDNLPENVCLKCVKQLDDMLRFIKNCKSSENTLMEVLRKLEQKSTNVKQEEETTNSCDDDIKDEEDSIDNEFFLKGVKQEIVELEPDIVLQKNKDTPLVCENCSESFSSSEGLHEHYKIFTNCRPKELLSSKKDICNIVDYLKKPKQRRGKKKIKEESDGEPEYVKGKKLKGKRRFLCNFCGKNYTRKNGLERHILSHSGIKPFECKECGKSYITKDTLKTHLLTHTGIKAYKCTVCQKSFTQSSHLSYHMRRHAGEKPHRCTYCSKAFLSSYHLERHKLMHTGVKPYECNLCGKQFVRSTTLRDHLLIHSGEKPFQCQHCGKQFNRKQSLTNHVLVHTGGKNSNSSSNVSLGVNMVSSDNSFKYMNEFPVNHLLAGDVPPYLSNSTDIKQTGVDAFLHNSIEMKQSESSASLHGTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736077;
- 90% Identity
- iTF_00736077;
- 80% Identity
- iTF_00736077;