Gnym035097.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- SCRT1_1
- Assembly
- GCA_963978555.1
- Location
- OZ021718.1:8093134-8095129[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 7.7e-05 0.072 14.3 0.4 12 38 306 329 299 334 0.88 2 5 0.086 81 4.5 0.6 17 28 342 353 331 369 0.75 3 5 0.023 22 6.3 0.2 18 28 369 379 358 391 0.82 4 5 0.00073 0.68 11.2 0.5 19 41 398 417 386 420 0.88 5 5 0.055 51 5.2 5.1 14 43 421 447 417 448 0.84
Sequence Information
- Coding Sequence
- ATGAAGTTAGATCAGAGAGAAGGAAAGTTTCGAGCAATTAAACATTATCAAACAAGGAAATTTGCTAATACCTACTACCTATTTATGATAACAGAAATTTCTATTGTTCCAGGTTCATCTCAAGAGCTCATACCGATCGGTACTACTTTAGAAAAAAGAGTAAACGCAAACCCCAATGAAACAACGACGCAATTACCTTCTAAGCGCAGCGCAGAAGAGACCGAAGCTGCCCACGATCTTCTCTCCCTTTCCCAAAGTCTCCCACCTCTACCAGCACCTAGCGTCGTAATGATCCACCATACAGTATCCACAGAAGACGATCCACCAAGTCCGACCCATAATTATAGATCTTCATCTCCACATATGCGTCAAGTAAAGTCGGAACCAATAGAAAAACGACACGTATCTGTGATCCAGCATGCTCCAGTTTCACAATCCGCACAGCCTGTGATAGTACCCCAACAAGTTCAACAAGTAGTAGTACCTTGTTACACTGCTTCGCCTATAGTATACGTGGTTCAAGTACCGGCGACCGTTCCGACGCCGCCGACTTCCGAATGTTCTTCTGACGTGGAAAATTTGCAGTTGTGTACGGTGGAAAGGCTGCACCAAGAGCAATCCGATGATATTTTAATACTTCCGCTTTCACCGGAACCTGATAATTTCGATCAGCGTAGAGTGAGAACGACAGTAAATACGTCCCATCTCAATATACCtgataagagaaaaaagaaaaatagaagattcaataaaaataaagaacatGAGACAAATTCTATCGATAGTTCTGATAAAGAATATGGGTTTGAAGCTTCCAGTACTGATATGACTACTACGACTGTTAAAACgAAATTCTACAAAGTGGTAGACGAAGACGAAGATCAAGAAATAGACGTTGAAACAACAACTGACGATTTACAAAAGAACCGGTACGTTTGCGTGGTATGCGGTAAACAGTACGCAACATCGAGCAATCTTTCCAGACACAAACAAACGCATCGCAGTCTCGATTCTCAGTCGGCTAAGAAGTGTATGACGTGTGGTAAAGCTTACGTCAGCATGCCCGCCTTAGCCATGCACCTCCTCACGCATAAACTAGCACACAGCTGCGATATATGCGGTAAGCAATTTTCACGTCCTTGGTTGCTGCAAGGTCATTTGCGATCGCACACCGGCGAAAAACCGTACGGTTGCGCGCATTGCGGTAAAGCCTTCGCGGACAGATCGAATTTGCGAGCGCACATGCAAACACACTCAAACGACAAGAATTACAGTTGCAACAAATGTCATAAGACGTTTGCGCTGAAATCTTATCTCAACAAACATCTGGAGTCTTCTTGTACGATGTGGGATTCGAAAACGCAACGGTTTAAGCGGACTGTGCATGCCGAAACACAAACTTTTTCCATTACCGTCGACTAG
- Protein Sequence
- MKLDQREGKFRAIKHYQTRKFANTYYLFMITEISIVPGSSQELIPIGTTLEKRVNANPNETTTQLPSKRSAEETEAAHDLLSLSQSLPPLPAPSVVMIHHTVSTEDDPPSPTHNYRSSSPHMRQVKSEPIEKRHVSVIQHAPVSQSAQPVIVPQQVQQVVVPCYTASPIVYVVQVPATVPTPPTSECSSDVENLQLCTVERLHQEQSDDILILPLSPEPDNFDQRRVRTTVNTSHLNIPDKRKKKNRRFNKNKEHETNSIDSSDKEYGFEASSTDMTTTTVKTKFYKVVDEDEDQEIDVETTTDDLQKNRYVCVVCGKQYATSSNLSRHKQTHRSLDSQSAKKCMTCGKAYVSMPALAMHLLTHKLAHSCDICGKQFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSNDKNYSCNKCHKTFALKSYLNKHLESSCTMWDSKTQRFKRTVHAETQTFSITVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911276;
- 90% Identity
- iTF_00911276;
- 80% Identity
- iTF_00736110;