Gnym012848.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021706.1:21953225-21959303[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.7e-13 6.3e-10 40.1 0.2 1 44 6 49 6 49 0.98 2 14 1.9e-13 1.8e-10 41.9 1.2 2 44 106 148 105 148 0.91 3 14 0.93 8.7e+02 1.2 0.1 16 44 162 187 156 187 0.80 4 14 6.7e-15 6.3e-12 46.5 0.6 3 44 241 282 239 282 0.98 5 14 7.6e-11 7.1e-08 33.5 0.2 1 44 338 381 338 381 0.97 6 14 1.5e-15 1.4e-12 48.6 2.8 3 44 430 471 428 471 0.97 7 14 8e-13 7.5e-10 39.8 0.6 1 43 511 553 511 554 0.96 8 14 1.9e-13 1.8e-10 41.8 2.3 1 44 609 652 609 652 0.96 9 14 9.8 9.1e+03 -2.1 0.2 16 28 738 750 734 766 0.83 10 14 0.46 4.3e+02 2.2 1.0 12 27 767 782 754 795 0.80 11 14 0.056 52 5.1 1.5 14 29 799 814 790 825 0.82 12 14 0.64 6e+02 1.7 2.2 16 29 829 842 819 853 0.76 13 14 1.3 1.2e+03 0.8 0.6 14 28 862 876 847 891 0.79 14 14 1.1 1e+03 1.0 2.2 18 40 921 940 905 945 0.82
Sequence Information
- Coding Sequence
- ATGTCTACTCGAAGATCACCTGTTTGGAATGTTTTTACCGAATCCAAAGAAACTAAAGGTACAGCTATTTGTAATATTTGCTCTCAAGAGTTTTCTTTCAGAACCACAACAACAAATTTATTGAAACATGTTCAAAGAAAGCATCCtgaaattaatataatattgaaTACCTCCACTCATATTGAAACCCAAAAAAGCATAGGATTACCTGAACTATTGCCAAAAGAAATAGAGATTATTATTGAAGATGAATGTGATGGAAATTTACCTAATAATAGTAACTCAGCTGAGGatcataattataaaaatgtttcaagtaTGTGGCTACATTTCACAAAAATAGAAACGTCGAGTGGTTTTTCCGCAGTGTGCAATGTTTGTGGCAAGAAGATTTCTTATAAAACCACCTCAAATCTTAAGAAACATTTAGAAAGAATACATCCTGAGCGTTTAGAAGATGATAGTTATCGTTTTGACGAGATATCAATGAAATGCCAATTTTGCCtagaaaattttatatctaaaaCTGAATTACAAATACATATACAAAAGTATCACCCTGTACAAATGCCCAATATAATTCAGAGTCAATCTGATGAAAAAAGTTCTGTATCAGGTAGTGATAAAGAGTCTTTAGATAGTGAAGAAGGACAATTTATATTAAACGATTCTGAAGAATTCTCCAATAACCAACAAAATTACAACGGAACAACATTTGGAGTGTGGTCATTCTTTACTAAATTGCCTGATTCTGATTTAGTGGCTTGTTGTAATCTTTGTAAAAGGCAATTATCATATAGAAGTactacatttaatttaaaaagacaTCTTAAAAGGAAACATCCTGAAGTTTTAATGAACAAAATTCAAGATCAGGAACAAGTTTTTCTGATTGAAGAACCGTTTAAACAAGAACTTGaagatgataaaattaaaaGCGATGAGGATAATTTTGATGAagatcaatattttcaaaaatataattatgatATTGATATGACTACTAGAAGATCACAAATTTGGAATGTTTTTACTATACTTTCAACTTTTGATTCTATAGCCACCTGTAACGTTTGTGATCAACAGTTTTCCTTTAAAAGCACAACCAATGATCTTAAACGACATTTTCAGAGAAAACACCCAGATTtatcaatggaaaataaaatagaacaaGTTAAGGTTAAAATTGATCCAGATATAAGCGATACAGTCTCAAATGTAAATAACAGTGAAACTGATGATGATCAAGAATTTTccaatgaaaaaaagttgaaaaaacatTCGATTCTTTGGAGTTATTTTACCAAAAGTATACCTGATGAATATCTAGCGACTTGTAATATTTGCAGAAAGAAATTATGTTATAAAAGTACCACAACGAACCTTAGAAAACATCTCAACAGTAAACATCCCAATATTCAGATAAATTTGACAGGTGATCAAGACCAAAACCagGTTCTGCAAACAGAAACTCCAAGTTCTCTTTCATGTGATGAAAACCCTGTTGGTTTGAAAAAAGCCAAGTACTACTCAGCTATATGGAATTATTTCACTAGAAATAAACCAAATGAATACTTGGCAACGTGTAATATTTGTGGAAAAGAATTAGGTTACCGAACATCAATCACTAACCTCAAAAAACATATCAGTATAATGCATGtagatattaaaataatggCGGATGAAGAACTGTCTCAAAATCAAGGATCTAAACAATCAACTGATTCACAAGACCTAAATGAAAATGCTTTAGATGACTATACGAATTCTATTGAAAATACAGAATCCTCCatgccaaatttaaaaaaagaaagaaggCATTATTCGAAAGTTTGGAATCATTTTACAAGAAAAAAAACGGATGAGTGTATTGCTTCTTGTAATCTCTGCGATAAGGAAATCGGATATAGAACATCAACGtcaaatatgaaaaaacatttgattGGTCTTCATCCTGATATTGATTTCCAGCTGGAAACTGAAATACATCAAAATCAGgTAATAGATGAGTCCCACGTAATCTGTCAAAGTTGTATCGAGGATATAGAAAAAGTTTAccaatttaaacaaaaaataacaaaatcttTCGACTTCTGGAGCAAATTAGAATCAGAACTTGAAATTGAAACTTATAACGACCCCACCAATGATAGAGATCCAACCGAATTAGAAAGTGACAGTTGTGAGAAACTTACCAGTGACAGTCTGATGAAATTTACTTGTGACAGATGTCATCGAGAATTCGAGTCTGCTTGTACAATGCTGAACCATGCTTGTACTACAGATAATAATGTCGCTCGAAAATTGTTCAAGTTCACTTGTAAATTTTGTggtattgtttttaataaacagTGGAAGAGAGATAGGCATTTAAAAAGgtGTCGAAATCCggtagaaaaaaaattcgatTGCACTTTATGCGAAAAAACTTACAAATCCTCGTTTTTACTCCGAGAACACATGTTCACTCACACCGGCGAACGGAATTACATGTGTCATTTTTGCGGTAAAACTTTCCATAGAGCTTCCGTTAGACATAAACATCTACAAAGTCACAATCGAAAGCCCGGTGAGAAGATCAACCGTAAATCTTTTTTGTGTTTCATTTGCGGCAAAACCTTTCCAGCAAATGTAGCAGCTAGACACATGAGAATGCATTCGGGAGTTAAAAGGAAAGAGTGTCATATTTGTCTCAAGAGGTTCGACCAAGTTGCTCATTTgaagGTACACCTTCGTACACATTCTGGTGAAAGACCGTACGAGTGTAGGATCTGCAGTCGAAGGTTTTCTCTAGCGGCAACTCTTCGTAAACATATGCGGCTTCACATTAAAACAGAAGAGATAGTAACTGATGGTATGCAGCAAGATCTGTCAATTGATACACCAATGAACTAA
- Protein Sequence
- MSTRRSPVWNVFTESKETKGTAICNICSQEFSFRTTTTNLLKHVQRKHPEINIILNTSTHIETQKSIGLPELLPKEIEIIIEDECDGNLPNNSNSAEDHNYKNVSSMWLHFTKIETSSGFSAVCNVCGKKISYKTTSNLKKHLERIHPERLEDDSYRFDEISMKCQFCLENFISKTELQIHIQKYHPVQMPNIIQSQSDEKSSVSGSDKESLDSEEGQFILNDSEEFSNNQQNYNGTTFGVWSFFTKLPDSDLVACCNLCKRQLSYRSTTFNLKRHLKRKHPEVLMNKIQDQEQVFLIEEPFKQELEDDKIKSDEDNFDEDQYFQKYNYDIDMTTRRSQIWNVFTILSTFDSIATCNVCDQQFSFKSTTNDLKRHFQRKHPDLSMENKIEQVKVKIDPDISDTVSNVNNSETDDDQEFSNEKKLKKHSILWSYFTKSIPDEYLATCNICRKKLCYKSTTTNLRKHLNSKHPNIQINLTGDQDQNQVLQTETPSSLSCDENPVGLKKAKYYSAIWNYFTRNKPNEYLATCNICGKELGYRTSITNLKKHISIMHVDIKIMADEELSQNQGSKQSTDSQDLNENALDDYTNSIENTESSMPNLKKERRHYSKVWNHFTRKKTDECIASCNLCDKEIGYRTSTSNMKKHLIGLHPDIDFQLETEIHQNQVIDESHVICQSCIEDIEKVYQFKQKITKSFDFWSKLESELEIETYNDPTNDRDPTELESDSCEKLTSDSLMKFTCDRCHREFESACTMLNHACTTDNNVARKLFKFTCKFCGIVFNKQWKRDRHLKRCRNPVEKKFDCTLCEKTYKSSFLLREHMFTHTGERNYMCHFCGKTFHRASVRHKHLQSHNRKPGEKINRKSFLCFICGKTFPANVAARHMRMHSGVKRKECHICLKRFDQVAHLKVHLRTHSGERPYECRICSRRFSLAATLRKHMRLHIKTEEIVTDGMQQDLSIDTPMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736236;
- 90% Identity
- iTF_00736236;
- 80% Identity
- iTF_00736236;