Gnym024355.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021713.1:1354587-1356834[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-08 3.3e-05 24.7 0.0 2 39 15 53 14 57 0.89 2 2 3.4 1.5e+03 0.1 0.1 16 25 57 66 53 66 0.82
Sequence Information
- Coding Sequence
- ATGAAAACTTACGAGAGAAAGACAAATCGGCAATCCTGGAGCCAGGAAAGTATGGAAGGCGCTATAGAGGAAGTATTGTCTGGACGCATGGGATACCTAAAAGCCTCAAAAGCCTTCAATGTTCTGCAGTCTACTTTAGAAGATCCAGTAAAAGAGGCTAGAACAAATCAACTAACTTCTAGCAAAGCCGCTAGAAaaCTTCACGAGGAAAAAAAACAGGTTGGAGCATTGGTATCAGCCGAACGAGGCGTTTTGGTTACTGCTGAAACTTGCATGAATGCGGCCGGAAATTTTATGCTAACAATGTTTGTTTTTCCTCGAAAGAGAGAAAATCCCGCGCTGCTTGACGATGCACCACCGGAAAGTTTCGCTCAATATCACCCTTCTGGATGA
- Protein Sequence
- MKTYERKTNRQSWSQESMEGAIEEVLSGRMGYLKASKAFNVLQSTLEDPVKEARTNQLTSSKAARKLHEEKKQVGALVSAERGVLVTAETCMNAAGNFMLTMFVFPRKRENPALLDDAPPESFAQYHPSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -