Gnym001462.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021704.1:14899108-14899896[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-08 9.3e-06 26.4 0.0 1 41 13 52 13 53 0.91
Sequence Information
- Coding Sequence
- ATGAAACCACCTGTAAAGAGAAAATTTCATCAATACGATGAAGATTCGTTAAAAAATGCAGTCGAAGCCATTCGAAAAGGGGGTAAATTACGTGAAATATGCAGGCTGTATGGGGTTCCGAAATCCACGGTGCAGGACCGTATTAGAGGAAAAGTAAGAGATGTCAATCAACAGATGGGACCAGATCCTGTGTTACCCAAGGAAACTGAACAAAATTTGGTAACATGGATTGAAAATCTAGCCAAATCCGGATTTCCATTAAAAAAGAAAGTATTACTCGACacagtgaaaaaaattgtaagagaagaaaaattgaaaacaccGTTCACCGATGGAAGGCCGGGTCAGAGTTGGTTCAACGGATTTATGAAGCGACATTCGCAGTTTTCCTTAAAAAACGCAGAGGCTCTTGAGAAATACAAAGCTCAAATTACGGAAGAATACATTAGGTCTTGGTTCAAGGATTTAAACTcttttttaatagaaataaaCGCCAGCGACATTTTAGAAGAACCGAGTCGTATGTTAAACGCCGATGAAAGTGGCTTCAGCTTGTGCCCAAAGTCAGGCAAAGTTTTGGGCCTCAGAGGACGAGACCTTAATATTGTTGAACAGGGAAATAGCAAAGATAATTTAACAGTGCTTATTACGTTTACGGCTGATGGCAGACTTTGTCCACCACTTGTCATATTTCCCTATGTAAAACCACCAAAAATTCTAGTTGACCGTATGCCCTCGGATTGGAGGTATTCTATGAGTATGTGGCCAATGATTTCGACAAATGGTTAA
- Protein Sequence
- MKPPVKRKFHQYDEDSLKNAVEAIRKGGKLREICRLYGVPKSTVQDRIRGKVRDVNQQMGPDPVLPKETEQNLVTWIENLAKSGFPLKKKVLLDTVKKIVREEKLKTPFTDGRPGQSWFNGFMKRHSQFSLKNAEALEKYKAQITEEYIRSWFKDLNSFLIEINASDILEEPSRMLNADESGFSLCPKSGKVLGLRGRDLNIVEQGNSKDNLTVLITFTADGRLCPPLVIFPYVKPPKILVDRMPSDWRYSMSMWPMISTNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -