Gnym005254.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021704.1:31079781-31080284[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.5e-10 4.2e-07 30.7 0.0 2 38 19 55 18 61 0.89 2 2 9.1 4e+03 -1.2 0.0 12 22 141 152 134 152 0.73
Sequence Information
- Coding Sequence
- ATGCCAAGAAAATATATTAGAAAGCAGAATATCAAACCACGTGTTTTGTGGTCTGAACAGAACTTGAAGAAAGCTATCGAAAATGTGAAATCTGGAAATATGGGCATCAATGAATCTAGTAGGAGATTTAATATACCTTCTAGAACTCTCAGAAGAAGATTGGCTTCTGATAACTCCAAAAAAGTTCCCCTGGGAAAGCCTCCTGCTCTTGGAGTATCGAACGAAATTCGTTTAGTAAATCATATTAAAAGATTACAGCAGACAGGATTCGCTCCTACAAGAACAATTGTCAGATCAATTGCTTTCAGTTTTGCTAAGAAACTACGTATAGGAAACGTATTCTCACAGCGAGGCGAAATGACAGAAACAGCAGGGATGCAttggttttattcatttatGGAAAGGCACCCAGAACTTTCCATAAGAAAAAGTGAAGGATTATCACTCGCCAGAGCAAAAGGTATGAATAGAGCAGAAGTTGATGAGTTTTacgacctaacctaa
- Protein Sequence
- MPRKYIRKQNIKPRVLWSEQNLKKAIENVKSGNMGINESSRRFNIPSRTLRRRLASDNSKKVPLGKPPALGVSNEIRLVNHIKRLQQTGFAPTRTIVRSIAFSFAKKLRIGNVFSQRGEMTETAGMHWFYSFMERHPELSIRKSEGLSLARAKGMNRAEVDEFYDLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00416061;
- 90% Identity
- iTF_00416258;
- 80% Identity
- -