Gnym007813.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021705.1:7943931-7944671[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-12 1.9e-09 38.2 0.0 2 41 16 55 15 59 0.92 2 2 9.4 4.2e+03 -1.3 0.0 23 34 169 180 168 182 0.89
Sequence Information
- Coding Sequence
- ATGGTGCGTAACTATGTTCGGAAGAAGCCGCCACTTAAATACTCCAAAGAGACCCTAAAAGCTGCCATAGAAGCAGTACAAAATCAAGAAATGACGGTGTGTAGGGCATCAATAACTTATAAGATTCCGAAAGCCACACTTTTCAAACATGTAAAAGGTCAAAGGGGTGTCAAAAGCTCTACCATGGGTAGACCAACTGCTCTTCCTTATGAGGAAGAAAAGAAAATAGCCGAAAGCATCAAGCTTATGGAAAAATGGGGCTTTGGCCTTTCTAAAAAAGAAGTCTTGAATCTTATAGGCCATTATGTGAAGGACAACAACATTAAAACGTCATTCAAAGATGGAATACCCGGCAACGActatttcatgagatttaaaaAAACCTTTAACCTGAGCCAGAAAAAACCACAAATGGTGGAAGTAGCAAGAAAAAGGAGTGTAGATCCATTTATCATCAATGATTACTTCACTCTGTTAAAAGATGTCATAAAAGATATTCATCCATCAAGAATTTATAATATAGATGAGACGAGTTTTTGGCTCGACCCAAGCAGAATTAAAGTTGTTGGCCAAAAAGGAACAGCTGCTCATAGGGCAACAAGTGGTTCTGACAGAGAAAATATATCTGTCTTATTAGGGGGAAATGCTGTTGGAGAAAAATTACCGCCGCATATAGTATTTAAAGGGAAAATGTGTGGGATTCATGGCTTGCAAAAAAGGATGAGGAATATGCAGGATTAA
- Protein Sequence
- MVRNYVRKKPPLKYSKETLKAAIEAVQNQEMTVCRASITYKIPKATLFKHVKGQRGVKSSTMGRPTALPYEEEKKIAESIKLMEKWGFGLSKKEVLNLIGHYVKDNNIKTSFKDGIPGNDYFMRFKKTFNLSQKKPQMVEVARKRSVDPFIINDYFTLLKDVIKDIHPSRIYNIDETSFWLDPSRIKVVGQKGTAAHRATSGSDRENISVLLGGNAVGEKLPPHIVFKGKMCGIHGLQKRMRNMQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01284430; iTF_00998514; iTF_00910490;
- 90% Identity
- iTF_00998514;
- 80% Identity
- -