Gnym029356.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- ct_1
- Assembly
- GCA_963978555.1
- Location
- OZ021715.1:87542-119222[-]
Transcription Factor Domain
- TF Family
- CUT
- Domain
- Homeobox|CUT
- PFAM
- PF02376
- TF Group
- Helix-turn-helix
- Description
- The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-27 1.2e-23 84.0 0.0 3 72 366 436 364 441 0.95 2 3 3.3e-32 3.4e-28 98.6 0.0 3 77 764 839 762 841 0.96 3 3 2e-30 2e-26 92.9 0.0 3 75 974 1047 972 1051 0.95
Sequence Information
- Coding Sequence
- ATGTCTCATCGGATGTTAAGCTTATGGCGAATTTCCACAGCGTCGGGATTAGAAGAAGAGGAAGAAagaGCAACATTGGCAGAGAAAGAAGTGACTACGTTGAAAGAACAACTTTCTGGAACAAATACATCGAATAATTGCGAAAATAAAGACACATCTAATATGGATAAGCTAAGTTTTGAAAACGAAATGGCTACCAAAGATAAAGAAATAAATCATCTAGTAGAGGAAATACAAAGGTTACAGGGATGTCTGTCGAAATTACAGGAATCATCCATGTCACAAATAAATCTATTAGAAGATCAATTGGAACAAAAGAGACAACACATTTTACGATTAGAAAATAAGTTGGATTTACAAAAAGACTACGAAGAACTGAAAAGAGAAGTCAGtatattacgctCAGACTTAGCCAATAATCCAGATGGGAAgaatattgaattattgttaGAAAAATCGAAAAATCTCACCGTTCACGATACAAAGGATAAATCACCTACTAGAGAAATTGAAGGGGTTGATCAGCATCCTCCGCAAACCCCTACACATTCTATCACCCCTCCAAATATCCTTCCGCCACCGTTTCAAAATGTTGACGCGTTCGGTAGTTTGTTAGGAGAAGAAATAGTTTCTTCTTGGAGAAGAAATATTGAACAAAATCGTATAACACCAAAATCACCCTCTACTTCTTTAGATGTACCGCTGAAAAGTTCAACGCCGGTCAACGCAGATTCTACCGCTGAGAAAAGTGCGGCTTCTACTCCTCAACCTTCGGATCAAACCTGCCAACCGTCACCGAATGAAAACCTCGTAAACGGTAACCCGAAGAGTCCGCAAGAAGACAACAACAACCATCACGTCAGTAATAATAATCTTCCATTGTCAGCGATGTGCACATTTTTAAGAAACGAAGACAATTTAAAAAGTCCTTATAGATTTGACGAGCATAGACCTACGTTCAAGTTTGCTGAAGATTTAGGTATGGCGCCTGGATCAATGGTGGGAAGACTTGGAGAGAGTCTTATACCAAAAGGAGATCCTATGGAAGCTAGACTCCAAGAGATGTTGAGATACAATATCGATAAATACGCTACACAGAATTTGGacACTCTTCACATAGCTAGAAGAGTACGAGAGCTTCTCTCAATTCACAATATCGGCCAAAGATTATTCGCAAAATACGTATTGGGGTTGTCTCAAGGCACCGTTTCGGAATTACTTTCCAAACCTAAACCTTGGGATAAACTGACAGAAAAAGGACGAGACAGTTACAGAAAAATGCATGCATGGGCTTGCGATGAAAATGCCATACTATTATTGAAATCTTTAATACCAAAGAAAGACCATTTTTCATCAACAGGCAAATCGGAAGCCGGTATACCTGCTTACGGTCGTCCAGATAACGATCATCCGGACGAAAGATTCGTCCACATTTTAAACGACCCGAATTTCCAACAACACataaaacaacaacaacaacatcaACATCTACAAACTCTCGAAGATAGTCATAGCAATGATGATTCTAAATCACCTCAAGGATGTAGCAGTCCATTTTCAAGAGACTCCAGTATGAATAAGAGACtcaaaaaatacgaaaatgaCGATATATCTCAAGACAAAGTTGTTCGAATATATCAAGAAGAATTAGCCAAACTTATGGGAAGAAGGTTAGAAGATTTCAGAGGTCAACGGGAAGGACCTTTTCCAGGTTTGTTTCTTCCTCATCTCTATAGCGGAAATACTTTGGAACGAACTCCCGAGGATCTTAGACTAGTTCTTGACGCATATCATCGAGAATTCGCTAAATTAAATCACGGTCAACAAAATCCAACTCAAATGCCGTTAAATCTTTTAGCTATCCAACAACAAGCAATCGCCCATCACCAGCAACAACATCAAAACTCTAACGGCGGCGTTCAGGATCTCTCAATTCCCAAAGACAAAATTAAAATGGTTAATGGCAACGTGGATGAAAAAGACAAGGACGATGATCCTATGTCACGTCATTCGGGGTCTGCTTTCAGCTTAGTACGGCCGAAGATTGAACCAGGAACCCAACCTAGTACGGGATCGACAGCTTCCAGTCCGCTAGGTAATTCAATTCTACCTCCCATGACTCCAAACGATGATTTTGCTGGTTCGGCAGCAGCTTCTCCGTTACAACGAATGGCAAGCATCACAAATTCTCTCATATCGCAACCTCCATCCCAGCCACATCCGTCTAATAACAATAGACCTCTTAAAGCAGTATTACCGCCAATAACTCAACAACAATTTGACCTCTACAATAATTTAAACACCGAAGATATTGTTAAAAAAGTCAAAGAACAATTAAGTCAGTATTCCATTAGCCAGAGATTGTTTGGTGAAAGTGTATTGGGATTGTCGCAAGGATCTGTTAGTGATCTTTTGGCTAGACCCAAACCTTGGCACATGTTAACGCAAAAAGGAAGAGAACCTTTTATTagaatgaaaatgtttttagaaGACGACAATGCCGTCCACAAGTTGGTAGCCAGTCAATACAAAATTGCACCGGAAAAGTTAATGAGAACAGGAGGATATGGAGGCGCATGTTCATCCATAGGAAAACCAATACCTCCAACAAACAAAATGTTGTCTGAAGCTGCAGGTCTCCTTAATAAAATGCAAGAATCACAAAACATATTACCTCCTTCTCTTCAACTTGGACCTCCACAAGGAATTAATCCTCAACCTCCACCACCTCCTATGTTATTAACTCCACCTGGTCTACCACCACATCATGCAATCAACATCCAAAATCAAGATCTCATGAAAAAAACCAATCACAGCCCGCATGGTATTCCACATTCGACGATGGGCCAGCAGCTTACACCACTCAGAAATATGCATCAACACATTTCGCCTAGTGTTTATGAAATGGCAGCTCTTACTCAAGACTTAGATACTCAAATTATTACCACTAAGATCAAAGAAGCTTTACTCGCTAATAATATTGGACAAaagATATTCGGCGAAGCAGTTCTTGGTTTGTCGCAAGGATCCGTTAGTGAACTTTTGTCAAAACCGAAACCCTGGCACATGCTCAGCATAAAAGGTCGAGAACCCTTCATAAGAATGCAACTTTGGCTAAACGACGCCCACAACGTAGACCGGCTGCAAGCTTTAAAGAACGAAAGGAGAGAAGCTAACAAGAGGAGAAGATCATCTGGAGCTGGTGCTCACGATAACAGCAGCGACACATCTTCAAACGACACCTCAGAATTTTACCATTCAAATTCACCTGGTCCAGGACCTCCATCGACAAAAAAACAACGAGTATTATTTAGCGAAGAGCAAAAGGAAGCTCTGAGGCTGGCTTTCCATTTGGACCCGTACCCTAATGTTAACACAATTGAATTTCTAGCGACTGAGCTTGGTTTGTCATCTCGAACAATCACAAACTGGTTTCATAATCATAGGATGCGTTTGAAACAGCAGGTGCCGCACGGGCTACCTTCTGATTTACCCCCCAGAGATCAAACCGGCAATCAACAGACTTTTGATCCAGTGCAATTTAGAGTACTTTTAAACCAAAGATTAATTGAACTTTCCAAGGAAAGAATGGGATTGAGCGGGGTTCCTCTACCTTACCCGCCATATTTAGCGACGAACGCGAATTTAGCTGCTTTAATAAGTCGGGGATTGTTGCCACCTGGTGATATCGACTTATCGGCTTTAAATAATGCTGTTAAAGAACAAATGAGCGGTTTAGATCTTTCTATGACCTCGTTAAAGAGAGAACCCGGTGAttatgatgatgatgacgatgTTGAAAGTAACGTCGGATCAGAAGATTCAAACATGTCGGGTGGAAGTCTTCGTGGTGAAATAAAAACGGAGCCCAAAGAAATACCCTCGAATCAAAGCAGATCATCGAGACGAAAACCTGCAGCACCTCAATGGGTTAATCCAAATtgggaagaagaaaaagaaaagactAACACAGGAGACGAAGTCATCATTAATGGAGTTTGTGTGATGCAGACTGGTGACGACTACGGACGAAGGAACGCCGAGGAAACCGTTCGAGTGGAACCTCAAGCGGTACTGGATAGGTTCGATGACGATCAAAGCGATACATCTTCGATCAGTAACGATAACGAACAAACTGACAAAATagaggaaaaagaagaagatgttAGTGAAATTAAAACAGAGGACAGTgaaaataaaaaccttaatCAAGAAAACGAAGAAGAAAGGTGGGAGTactaa
- Protein Sequence
- MSHRMLSLWRISTASGLEEEEERATLAEKEVTTLKEQLSGTNTSNNCENKDTSNMDKLSFENEMATKDKEINHLVEEIQRLQGCLSKLQESSMSQINLLEDQLEQKRQHILRLENKLDLQKDYEELKREVSILRSDLANNPDGKNIELLLEKSKNLTVHDTKDKSPTREIEGVDQHPPQTPTHSITPPNILPPPFQNVDAFGSLLGEEIVSSWRRNIEQNRITPKSPSTSLDVPLKSSTPVNADSTAEKSAASTPQPSDQTCQPSPNENLVNGNPKSPQEDNNNHHVSNNNLPLSAMCTFLRNEDNLKSPYRFDEHRPTFKFAEDLGMAPGSMVGRLGESLIPKGDPMEARLQEMLRYNIDKYATQNLDTLHIARRVRELLSIHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDENAILLLKSLIPKKDHFSSTGKSEAGIPAYGRPDNDHPDERFVHILNDPNFQQHIKQQQQHQHLQTLEDSHSNDDSKSPQGCSSPFSRDSSMNKRLKKYENDDISQDKVVRIYQEELAKLMGRRLEDFRGQREGPFPGLFLPHLYSGNTLERTPEDLRLVLDAYHREFAKLNHGQQNPTQMPLNLLAIQQQAIAHHQQQHQNSNGGVQDLSIPKDKIKMVNGNVDEKDKDDDPMSRHSGSAFSLVRPKIEPGTQPSTGSTASSPLGNSILPPMTPNDDFAGSAAASPLQRMASITNSLISQPPSQPHPSNNNRPLKAVLPPITQQQFDLYNNLNTEDIVKKVKEQLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGGYGGACSSIGKPIPPTNKMLSEAAGLLNKMQESQNILPPSLQLGPPQGINPQPPPPPMLLTPPGLPPHHAINIQNQDLMKKTNHSPHGIPHSTMGQQLTPLRNMHQHISPSVYEMAALTQDLDTQIITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLNDAHNVDRLQALKNERREANKRRRSSGAGAHDNSSDTSSNDTSEFYHSNSPGPGPPSTKKQRVLFSEEQKEALRLAFHLDPYPNVNTIEFLATELGLSSRTITNWFHNHRMRLKQQVPHGLPSDLPPRDQTGNQQTFDPVQFRVLLNQRLIELSKERMGLSGVPLPYPPYLATNANLAALISRGLLPPGDIDLSALNNAVKEQMSGLDLSMTSLKREPGDYDDDDDVESNVGSEDSNMSGGSLRGEIKTEPKEIPSNQSRSSRRKPAAPQWVNPNWEEEKEKTNTGDEVIINGVCVMQTGDDYGRRNAEETVRVEPQAVLDRFDDDQSDTSSISNDNEQTDKIEEKEEDVSEIKTEDSENKNLNQENEEERWEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01368896;
- 90% Identity
- iTF_00910405;
- 80% Identity
- iTF_00735377;