Gnig015805.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- -
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010007447.1:368-7058[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0018 0.3 12.8 3.9 1 20 47 66 47 71 0.95 2 15 0.0013 0.2 13.3 0.6 1 23 73 96 73 96 0.95 3 15 0.011 1.8 10.3 4.0 1 23 123 146 123 146 0.93 4 15 0.067 11 7.9 2.3 1 21 165 185 165 186 0.94 5 15 0.0065 1.1 11.0 3.7 1 23 194 217 194 217 0.90 6 15 0.015 2.4 9.9 0.6 1 14 229 242 229 245 0.91 7 15 0.0037 0.6 11.8 1.5 1 20 277 296 277 298 0.95 8 15 0.00056 0.091 14.4 1.1 1 21 325 344 325 345 0.96 9 15 0.0064 1 11.1 4.1 1 23 353 376 353 376 0.91 10 15 0.0053 0.86 11.3 3.1 1 20 391 410 391 412 0.93 11 15 0.0045 0.73 11.6 6.2 1 20 420 439 420 443 0.93 12 15 0.0081 1.3 10.8 1.3 1 21 462 482 462 483 0.95 13 15 0.038 6.2 8.6 3.8 1 23 491 514 491 514 0.91 14 15 2.1 3.4e+02 3.2 5.9 1 21 530 550 530 551 0.93 15 15 6.2e-05 0.01 17.4 4.6 1 23 559 582 559 582 0.95
Sequence Information
- Coding Sequence
- ATGTGTCTAATTCAATCTCATCatgatACAATTGTCGAAGAATTCGAATTTGTGCCAGTAAATCCAGAAAGGCCACTGATACGTCTGGTTCCCATCGAATCTTTATCAATGAATAAGAAAAACACTAAAGAAGGTGGTCACACTTGCAGAAAGtgcaaaaaagtttacaaatcCAAAGCGGGACTCATTAAGCATCTGCTCCATTGCGGCAAGAATTATATATGTGATCATTGTGGCTATTCGACCAAGTGGAGAGGGAATCTAATCACGCACATCAATGCCAAACATACGGCTTCGATGAAATTGAGTATTAATGACGGTGAAGAATCAAAAAAGCAGCCTGAAAAGACATTCAAAAAAAGAGGCTTTTTTTGCGATTACTGCAGTCACTCCAGCAAACTCAAGTCTCATCTTGCCAAGCACATCATCGGGAAACACTCTCATTTGTTCAACGGAACCGACGGTATCAATGCTGAAGAACGCGTGAAAATTCACGTCTGCAAGACCTGCGACCGTCGATACAAATGGAGAGAGAGCTTGTACAATCATCGGAGATATGAATGCGGCAAGGAACCAGGATTCTTTTGTACCCATTGCAATTATCGTTGTAAGCAGAAACCAACTCTCGCCGCGCATATTGGATGGAAACATGGATTTGCCAAATCCATGAAACCAGGCATTTCGTACAAATGCGAAACTTGTAATAAAACTTATACCAATCCAAATAAAATCGAGATTAAGCAAGAATTCAAATATTCTCCACCGGAAATAATGCAGCCTTACGTACGCATCAGTCCAATTTCATTCCCATTGAAACGTATCACAGGTCACAAATGTACAAAATGTGgccaaaatttcaaatggaaGAAAAGCCTTTACCGACATTTGGAGGAAGAATGTGGCAAGAAATCtaatagcaaaaaaatacTAAGTCTTACCATCCAACACAAAGCCAACTCCAGTtctaaattttacaaatgtaaaaaCTGCTACAAAACGTACACAAAAGAAGCTCTAGTTCGACATATAAGGTATGCGTGTGGTAAAAAAAGGAGCTTTTTCTGTGATTACTGCGGCCATTCCAGCAAACTTAAGTCTCATCTTGTTAAGCACGTCACCGCTAAACACGATGATTTAATCAACGGAAGAGACTCCAGATCTAAAAAAGTGTACAATTGCAATAACTGTTTCAAAACGTACAGATCGAAAGAAGCTCTACATCAGCATAGTAAGTATGTATGTGGCAAAGAACCGTGTTTTTTCTGTGATCACTGCAGTTACTCCTGCAAACAAAAGTCTCATCTTGCCAAGCACGTCCCCAGAGTACACGAAGATTTAATAAACGGAAGAGACAGTGCCGACAATGAACAACGCGTGAAAACTCACGTATGCGTGACTTGCAACAAAAGATACAAATGGAAAGACAGCTTGCAGAATCATCTGAGATATGAATGCGGCAAGGAGCCTGGATTCTTCTGTGCCCATTGCGATTATCGTTGTAAGCAGAAGTCAAGTCTTCCCTCGCATATTGCATGGAAGCATAGGTTAATTCCCAAACCCAATAGGAACCAAAACACTCAACAATCGCACAGATGCAAAACATGTAACAAAATTTACGCGTGTTCGAGAACTTTATGGCACCATAGAAAGTATGTGTGCGGCAAACAGCCAAGCTTTTTCTGTGAATATTGCGACTACTCGTGTAAGCAAAAAGTTAATTTGAAGAGGCACGTTGAAAAGCGACATGCGATGATGAGTCACATCGATGCTGCAAGTGCAGTAGGACCTATAAGTAAAAACGACATTTAA
- Protein Sequence
- MCLIQSHHDTIVEEFEFVPVNPERPLIRLVPIESLSMNKKNTKEGGHTCRKCKKVYKSKAGLIKHLLHCGKNYICDHCGYSTKWRGNLITHINAKHTASMKLSINDGEESKKQPEKTFKKRGFFCDYCSHSSKLKSHLAKHIIGKHSHLFNGTDGINAEERVKIHVCKTCDRRYKWRESLYNHRRYECGKEPGFFCTHCNYRCKQKPTLAAHIGWKHGFAKSMKPGISYKCETCNKTYTNPNKIEIKQEFKYSPPEIMQPYVRISPISFPLKRITGHKCTKCGQNFKWKKSLYRHLEEECGKKSNSKKILSLTIQHKANSSSKFYKCKNCYKTYTKEALVRHIRYACGKKRSFFCDYCGHSSKLKSHLVKHVTAKHDDLINGRDSRSKKVYNCNNCFKTYRSKEALHQHSKYVCGKEPCFFCDHCSYSCKQKSHLAKHVPRVHEDLINGRDSADNEQRVKTHVCVTCNKRYKWKDSLQNHLRYECGKEPGFFCAHCDYRCKQKSSLPSHIAWKHRLIPKPNRNQNTQQSHRCKTCNKIYACSRTLWHHRKYVCGKQPSFFCEYCDYSCKQKVNLKRHVEKRHAMMSHIDAASAVGPISKNDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -