Gnig024733.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- -
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010024148.1:2033-5343[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.048 7.9 8.3 0.3 1 19 100 118 100 120 0.88 2 15 2.8 4.5e+02 2.8 0.6 3 23 127 147 127 147 0.95 3 15 0.00095 0.15 13.7 3.3 3 20 173 190 171 192 0.93 4 15 0.16 25 6.7 4.8 2 23 197 219 191 219 0.91 5 15 0.0035 0.57 11.9 1.4 2 20 228 246 227 246 0.96 6 15 0.00088 0.14 13.8 3.8 2 23 256 278 255 278 0.91 7 15 0.00051 0.083 14.5 1.2 2 20 313 331 312 333 0.93 8 15 0.016 2.6 9.8 7.8 1 23 337 360 337 360 0.95 9 15 0.15 25 6.8 0.0 2 19 436 453 435 455 0.94 10 15 0.0086 1.4 10.7 1.2 1 23 460 483 460 483 0.96 11 15 0.0038 0.62 11.8 0.1 2 20 495 513 494 515 0.90 12 15 0.014 2.3 10.0 0.3 2 23 522 544 521 544 0.94 13 15 0.014 2.3 10.0 0.9 1 20 622 641 622 643 0.95 14 15 0.037 6.1 8.7 0.9 2 23 651 673 650 673 0.90 15 15 0.0011 0.17 13.5 0.1 2 21 688 707 687 708 0.94
Sequence Information
- Coding Sequence
- ATGGCAGCTGCTGTAAATAGTGTGAATTCTTTTGAATTCGTTAAGATTGACGATATACCCGCTCAAGAGGCGAAAGACGATGCAGCTTCTGTACGTGATCCTTTCCAAGTAAATAAACATCAAAATCAGATTTTGAAAGAAGAAGTTCATTTGGACTGGGAGCATAATGATGGTGataTGAATGGTGCTGTGGCTAATGTTACCACAGGTACCGTTGATACAATTCCTTTGGAAGATAttccaataattattttgcagcagccTACTCAACCAAGGATCATAAGAAAGAAGATACTATACGAGTGCAGAATCTGTCATAAAACATTCCTAGATGTTCGAACCTTACAAGAGCATTCAGCACAGTGTAAAATTATAGGATGCCCGCTGTGTAAATTTAGAACTTTTGAGGACTCAGCCTTTCAAGAACATTGGAAATCCCACgaagcaGTTTGGAAGCATAAAAAGCCAATTCTTACTTTTACTGAAGTAAAGGAAATTCCTCCACCAAATTTAGaCTGTCCAAATTGTCATAAAAAGTACAAGactaaaaatcatttatatttgCATATGTTCAAATGTGAGAGATTACGCTGTATGCATTGTGACTTTGTGACTTTCAAAACCTATGAATTGAAAAGGCATTTTAATACTGTGCACTTAAAGCCTGAAGAAGTGACCAAATctTGCCCTAGATGTAATAAAGTACTGAAGAATAGACACAGTTTATCTACACATATGTGGATTTGTGGAAAGAAGCCTCGTTGCGAGTGTCATGATTGTGGctataaaacttttaataaGTGGAATTTGAGAACCCACATCTTGGCAAAACATGTACAACAAAAATCAGAAAAGAATCTCTCACAAAACGTGAATGTTCCAGAGAAAGTTCCTGTGCCTCCAATAATTGATAATGGTCATCCATTTACTGAAAAAGTGTGTAGTCTTTGCAATAAAGTATTCAAACATCAACGAGCCTTGAGTGCACATACTATCCACTGTAAATTATACAATTGCAATCATTGCCCTTTTGAAACTTTTAGAAAAGCTCATCTCAAGAAACATATACATCGAAATCATAAACCTTTCGTTGCTTCTCCTAAACGTCAACTTCATCTTCCAAGCTCATCTTGTCAACTTGACATTCTAAGTCCAACATGTCAACTTGACGTTCCAAGCCCATTATGTCAACTTGACGTTCCAAGCCCATCATGTCAACTTGACGTTCCAAGCCCATCATGTAAACTTAACATTCCCAGCCCACCGTGTCAACTTGATATTTCAAACTCATCATGCACTGAACAAAtGTGTCAAATTtgttatgaaatatttcaaaatgaagaGGCTTTGCGCGCCCACGCTGTTAACTGTAAAGAATATGAATGCACTCAgtgtaaatataaaacttaCATACAAGCCGACCTCACGAATCATATTCAGCAAAAGCATCAACGAAATGAGCGGGTACATATAAATGGAACAGAGTGTCCGAAATGTGGcaagaaatacaaaaacagGCAAGTTGTGAATGCTCACTTGATATATTGTGGCAAGGATTCTTTGCAATGTGACTATTGTCCTTATAAAACTAAGCGCCGTGGGATATTGAAAAAGCACGTAGCATCAGTGCATCCCTCGACATTGGAGCTCGAAGACACTGTTGATCCACCAGATGACGAGCCAACTGCAATGTGTGAAAAATGTGgccaaaatttgaaagaatatgAAACTATGACGTTTCATTCTTTCTATTGCCCAAAAAAACCATTTCTGGATTGTAACATGTGTTCATTTAAGACTAGATATGGCTTATGCTTGAAGAATCACGTTTTACGAGTACACTGTCAAAGCGTTTTAGAGTCATATGaatgtcCAAAGTGCAGTGGCAAGCTAAAAACGCAAGAGACATTCAAGAGACATTTATTTAGCTGCATACCAGAAACTGTTTTGCGTTGTAGCGTATGTACCTACATGACGCGAGATCCATCATGTTTGTcagatcatgtgatagataaACATTACAAAGATGATCCGTCTGATACTAGTGATACTAAGTTGATTCcgtGTCCCAAGTGCGGCAACAAAGTGAAGAACCCTAAAAGTTTGCAAAACCACTTGAAATCTTGCGAAAAGGAGCCACAtagataa
- Protein Sequence
- MAAAVNSVNSFEFVKIDDIPAQEAKDDAASVRDPFQVNKHQNQILKEEVHLDWEHNDGDMNGAVANVTTGTVDTIPLEDIPIIILQQPTQPRIIRKKILYECRICHKTFLDVRTLQEHSAQCKIIGCPLCKFRTFEDSAFQEHWKSHEAVWKHKKPILTFTEVKEIPPPNLDCPNCHKKYKTKNHLYLHMFKCERLRCMHCDFVTFKTYELKRHFNTVHLKPEEVTKSCPRCNKVLKNRHSLSTHMWICGKKPRCECHDCGYKTFNKWNLRTHILAKHVQQKSEKNLSQNVNVPEKVPVPPIIDNGHPFTEKVCSLCNKVFKHQRALSAHTIHCKLYNCNHCPFETFRKAHLKKHIHRNHKPFVASPKRQLHLPSSSCQLDILSPTCQLDVPSPLCQLDVPSPSCQLDVPSPSCKLNIPSPPCQLDISNSSCTEQMCQICYEIFQNEEALRAHAVNCKEYECTQCKYKTYIQADLTNHIQQKHQRNERVHINGTECPKCGKKYKNRQVVNAHLIYCGKDSLQCDYCPYKTKRRGILKKHVASVHPSTLELEDTVDPPDDEPTAMCEKCGQNLKEYETMTFHSFYCPKKPFLDCNMCSFKTRYGLCLKNHVLRVHCQSVLESYECPKCSGKLKTQETFKRHLFSCIPETVLRCSVCTYMTRDPSCLSDHVIDKHYKDDPSDTSDTKLIPCPKCGNKVKNPKSLQNHLKSCEKEPHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -