Gnig012292.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- -
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010003389.1:27976-32315[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.9 9.6e+02 1.7 0.1 2 11 87 96 86 99 0.86 2 18 2.6 4.2e+02 2.9 0.8 2 21 116 135 115 136 0.89 3 18 0.045 7.3 8.4 1.3 1 23 144 167 144 167 0.96 4 18 0.00038 0.061 14.9 2.2 1 20 176 195 176 197 0.94 5 18 0.031 5 8.9 6.7 1 23 204 227 204 227 0.96 6 18 3.3e-05 0.0054 18.3 0.3 1 20 235 254 235 256 0.92 7 18 0.91 1.5e+02 4.3 1.2 2 23 265 288 264 288 0.89 8 18 0.043 7 8.5 0.8 2 17 397 412 396 413 0.89 9 18 0.0083 1.3 10.7 0.9 1 21 425 445 425 446 0.94 10 18 0.27 44 5.9 0.4 3 23 456 477 454 477 0.94 11 18 4.5e-05 0.0073 17.8 0.7 2 21 487 506 486 507 0.94 12 18 0.081 13 7.6 1.7 1 12 546 557 546 561 0.89 13 18 3.7 6.1e+02 2.4 0.1 2 12 614 624 613 626 0.85 14 18 0.028 4.5 9.1 0.5 2 21 643 662 642 663 0.93 15 18 2e-05 0.0033 18.9 0.1 2 21 679 698 678 699 0.93 16 18 0.015 2.4 9.9 2.0 1 23 707 730 707 730 0.94 17 18 9.4e-05 0.015 16.8 4.7 1 21 739 759 739 760 0.96 18 18 0.0022 0.36 12.5 7.4 1 23 768 791 768 791 0.97
Sequence Information
- Coding Sequence
- ATGTATTTCATGCCAAAGCGAGAACCTGCCACATCAACAGAATTCGTCTCagtaaaagaggaaaaaattgaCATCTCTGACAACGATGAAATGAATCCGCTAATGACTGatgatgaaaaagatagcaaattgaatttaccGGGTACTTCTGGATCTTTTCAACAGTCGAATCCAATTGAACTAGTTGCTACTCTCCAAAATTCAGTAAAgcctaaaaaaatacatgacaAATATCATTTGCACAATAGCATGGAACTGTACTGTCCGATGTGCACGCGCGTTTATGCCAAAATCTATGGTCAAAGACAAACGCACTGTCCGAGTTGCAACGAGTGGTTGTACTCTCAGTGCATCAAATGTAAACGTCGCTATCGTCAATACAACGACATAACAATGCATCTAAAGTACGAGTGCGGCAAAGAAAAACGTTTCACCTGTCAATTATGCCACTACAAAGCAGCGCGTTCGGATCGCATGAACGACCACATGAAAGCTGTGCACTCCGAGAGTTTGCCAGAATCGAAGTTCAAATGCGAAAAGTGCGACAAGACATTCAAACTTAAACGATACTTGTCGGAACACACGTCGCGCGAATGCGGCAATCTGCAATTCAAATGCCATTACTGCGAATTCAAAAGCAAGTATCGTAAGAGTCTGACAAATCACGTGAAGAATCGACACGAGAGAGACGACAGTATTTCGTTTGACTGCCAAAAATGCGGAAAAATATATCGTACAAAGGGCGCACTCAAGAAACACGTGGATACAGTTTGCGGCAAGACACCGTCGCTTCAGTGCGATAATTGCGAGTACAAGACTTACCATAAATATCCGCTGTTGGCAATACACATGCAGAGACAACATCCAGCTGTGTacggaaaaaatgattttgtctgTCCAAGTTCCTCAACGGTGCCTACTTTGCATGATAATTGCAACAACAACACCGTCAAGAATGCGGATCTCGTTAATTTTGAACGCAGCCAGGAATTAGAAGaaaatgaaataatcataaaagATGAGCATGGCGATTCACCGCAGGATTCTTCTGATTTTATACTACCAGATTACCCAAatttatacGACGACGCCGATCAAAGTCCACCAACATTCAATCCAACAGACTACATATCAAAAAAGTCGTCTACACCCACCGAAAAATTCTCTTCTAAAGATCTAATCCTACTGTACTGCCAGCACTGCAATCGCATCTTCAAAAAGCAGTACAACGTGAAGCAAAGCGAATGCGAAAATTGCGAGCGAGCATTTCAATATCAATGCGTGAATTGCGACAAACGTTACAATCACCAGCGAAGCGCGATAACTCACGTGAAATCAGAATGCCGAAATCGTTTGGGTTTCGGCTGCGTATTGTGCGATTTCCGTACGAATCATCGTAAAGGACTTGTCGCGCACATCGAGAACGCCCACGCAGCTTATGATCCCAACAAAGCCGTCACCTGCGATCAATGCAAAAAAGTctacaaaaattacaagaacTTGAGAAAGCATCAGTTGATCGATTGTGGCAAGATGCCAACTTTACAGTGTGACCATTGCCATTACAAGAGCAATTATAAGAGCAGGATCAGGGAGCATATCAAGTGCAGACACATGCTGGAGACTAAAGAGTTTCACAAATGCTCGAAATGTGGCAAGAGATACAAGACTACAAACGACACATTGAAAGCTGTCAAGGAGAAAGCTCCGAGCAAAGCTGACGACCGTCCGAATGGTAACGGTGTTCGAGAAACTGTGATCAAGAGAGCCAAAGAAATCGTGGAGACGTACAAGGAACGCATCGAACGATATACCTgTCCCCCCGAATTGATTCTCCTACACTGCTCGCTCTGCAACGAATCCTTCGAGAAGCCTCCGCGTAAAAAGATAACCACCTGCGAGCGTTGCGGCACATGTCTGCTCCTCCAGTGTTCCAAATGCCGGAAAATCTTCCGGAAGTACATGACGCTTTACGGCCATATAAAAGCAATCTGCGGCAATCCCGAGGTGACCGAGTCGAAAGAAGGTCGCGTACCATGTCCCGATTGCGGCACCAAGTTCGCCAGTTACGAGAATCTACGTCGCCATAAGAAACTCACCTGTAAACGTCAAGCTGCCTTCAAGTGTCAATATTGCTCATTTACAAGCAAATACAAAGCTTCGTTGGAGCTTCACGAGAAAGGACGACATCGCGAGGTCACCACCGACGATCTGTTCAAGTGCGAGTGGTGTCGCAAAAGTTTCAAGCATTCGCAAACTCTCAAGAGACACCGCAAGTACAACTGCGGCAAGGAGAAGAGTTTTTCGTGCGGGCATTGCGATTACAAGTGTTACCTTAAGTATCAATTGAAGAACCACATGAGATCTCGTCACGAGATGCTGTTTTATGGGATACGAAAATAA
- Protein Sequence
- MYFMPKREPATSTEFVSVKEEKIDISDNDEMNPLMTDDEKDSKLNLPGTSGSFQQSNPIELVATLQNSVKPKKIHDKYHLHNSMELYCPMCTRVYAKIYGQRQTHCPSCNEWLYSQCIKCKRRYRQYNDITMHLKYECGKEKRFTCQLCHYKAARSDRMNDHMKAVHSESLPESKFKCEKCDKTFKLKRYLSEHTSRECGNLQFKCHYCEFKSKYRKSLTNHVKNRHERDDSISFDCQKCGKIYRTKGALKKHVDTVCGKTPSLQCDNCEYKTYHKYPLLAIHMQRQHPAVYGKNDFVCPSSSTVPTLHDNCNNNTVKNADLVNFERSQELEENEIIIKDEHGDSPQDSSDFILPDYPNLYDDADQSPPTFNPTDYISKKSSTPTEKFSSKDLILLYCQHCNRIFKKQYNVKQSECENCERAFQYQCVNCDKRYNHQRSAITHVKSECRNRLGFGCVLCDFRTNHRKGLVAHIENAHAAYDPNKAVTCDQCKKVYKNYKNLRKHQLIDCGKMPTLQCDHCHYKSNYKSRIREHIKCRHMLETKEFHKCSKCGKRYKTTNDTLKAVKEKAPSKADDRPNGNGVRETVIKRAKEIVETYKERIERYTCPPELILLHCSLCNESFEKPPRKKITTCERCGTCLLLQCSKCRKIFRKYMTLYGHIKAICGNPEVTESKEGRVPCPDCGTKFASYENLRRHKKLTCKRQAAFKCQYCSFTSKYKASLELHEKGRHREVTTDDLFKCEWCRKSFKHSQTLKRHRKYNCGKEKSFSCGHCDYKCYLKYQLKNHMRSRHEMLFYGIRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -