Basic Information

Insect: Galeopsomyia nigrocyanea
Gene Symbol: -
Assembly: GCA_035047105.1
Location: JAWWMK010000008.1:11698216-11701589[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.02 3.2 9.5 0.1 2 23 308 330 308 330 0.92

2 8 1.9e-06 0.00031 22.2 0.7 1 23 348 371 348 371 0.98

3 8 3e-06 0.00049 21.6 1.6 1 23 398 420 398 420 0.98

4 8 1e-05 0.0016 19.9 3.6 1 23 425 447 425 447 0.98

5 8 0.0002 0.032 15.8 6.4 1 23 453 475 453 475 0.98

6 8 8.6e-05 0.014 17.0 4.5 1 23 481 503 481 503 0.98

7 8 1.5e-05 0.0024 19.4 3.4 1 23 509 531 509 531 0.98

8 8 0.056 9.1 8.1 2.5 1 20 537 556 537 557 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.02	3.2	9.5	0.1	2	23	308	330	308	330	0.92
2	8	1.9e-06	0.00031	22.2	0.7	1	23	348	371	348	371	0.98
3	8	3e-06	0.00049	21.6	1.6	1	23	398	420	398	420	0.98
4	8	1e-05	0.0016	19.9	3.6	1	23	425	447	425	447	0.98
5	8	0.0002	0.032	15.8	6.4	1	23	453	475	453	475	0.98
6	8	8.6e-05	0.014	17.0	4.5	1	23	481	503	481	503	0.98
7	8	1.5e-05	0.0024	19.4	3.4	1	23	509	531	509	531	0.98
8	8	0.056	9.1	8.1	2.5	1	20	537	556	537	557	0.93

Sequence Information

Coding Sequence: atgtgcgctCGCCTGCTGGCATGTCCATTATGCTCGCAACCGGGTTTCACAACATTGGATTCGTTGCGAGCGGGACTCGTGAGCGTAGCAACCCGTCCATTGGCATGTCCAGTTTGCAACGAGGTGTTGCTCGGTATCGACAAGTTGACCATTCATCTGTTCGGCCACACAGTCAGTTCTGGCAATACACCTGTGGGTGGTGGTAACGAGTCTGCTAAATTCATCGATAACGCAAACAACGCTCAAATCGTGCGTAATGCCATTCAGTCGTGGAATGTGCTGGACACGAGTAATGTTCAGGTCAAGGATAGCAGCAGAGACAACACGGGTAGTGGGATTTACATTCCCATCGAcgagattgaaaatttcagaaatttgACGACTATCAAGGATGGCAATGGTATAATTCCGATGCAGAGTACACAGACAGCAACAAACGCTCCGAGTCAAGTGATTCTCCTGCAAAACGTAGGCTCACAGTCCAAGTTATTCTCGGCAGATCTGATGGATCCGATGGTCAAGCCGCACGAGCAAGCGAATCTCTATCAGACAATCCAAACGGCAACGGCCGTATCCTCGAACGACATCACGGAGCCAAATCCAAATGCCGATCTCATCGAAATTGGAGTTCCCAACGATGTCGTTGAACTCGACAAAAATACTCAGACCTCGTGGAGCGAAAATATAAGCCCCGCAGAAACATCCTCGTCAACATTCCCCCAAAGATCTCACACCGACCGTCTCGAAGAGCTCGTGAAATCCGCTCAAATCACCTCATCGCCATTGGGCACATTCCACGAGGCGTACGATTGCTCGAGACCCGAGTCGCCGAAAGTCATCGAAATATCGGCAGCGACGAGCAGCGCCAGCAAACCAACCATCAAATCCACACAGATACTCGCACCTGGCGAACGCATGGAGCGTTGCAACATTTGCGGTCTGAGCTTTCCCGGACGTAACGTGCTGATTTTGCATAAGCAACTCGCGCACATGATCAAGGAAAAAGACGCGAATTTGTCGCCCGACGATCTGATGAAGAATTATCCGTGCCACTTGTGCACCAAGGTATTCAAGATGCGCGGCAGTTTGATGGTGCACATGAGGGTCGCTCATCCCGGAGTCAATATGCCAAGAGCAAAACCAGTTCCGGAGCCAATCGAAGAGCCACCGAGCGACGAGCCCGAAGGTAACTACATCTGCCCGACGTGCGgcaaaagtttcaaaaagGAGCATCAAGTGACTCAACACATCAAAATCCACGACATGAAGCAATTCGAGTGCGACGTTTGCAGCAAAATGTTCACCACCAAGTACTTCCTGAAGAAGCACAAGCGTTTGCACTCGGGCGAGATGCCGTACAAGTGCAGCATCTGCGACAAGACTTTCACCTTTCAGCAGTCTTATCACAAGCATCGGCTCTATCACAAAGACGACAAGCCGCACACTTGCAACACCTGCGGACGTTCGTTCAAAGAATTGTCGACGCTGCACAATCACGAGAGGATTCATACCGGCGAGAAACCGTTCTCTTGCGAAACGTGTGgtaAATGTTTCCGGCAAAGGGTGTCTTACTTGGTACATCGTCGTATTCACACCGGCGCAATGCCGTACGAGTGTCTAGCTTGCGGTAAAAGCTTCAGATACAAGGTCAGTCAAAGAACGCACAAATGCCCGATGCAACCGCAAGACGAATCGGAGCAACAGTCCGGCGAAGCGTCGCAAGCTTCGATGGACAATGACAATTCGGAGATGCAAGAAACACCGGAGATATCGTCGCAAGACGAGCACAGCATGGACGATTCGGTGACCAGCGAGGACAATCAATACATCCTGGTTTTGGGCAACGACGGCCAGCACATGTTGAAGAAAAAGTCGGAGATGGACAACGAATCCAATAAAGTCAGCTCGACCAGCGAACGAACGGACAAAAGGAACAACGACGAGAACAACGGTATAATGGAGAATATGTGGAGCGAGGAGCAAACCGGTCAGATGGAGTTCAAAGAGAGCAGCGAGTCGAAGAACGAAGATGCAATGGTGAACGCGAATCTGTGGAGCGAGTCGTTCGACGGCAAGAGCGACAATCAAAATGACAATTCGAACGATCTGTGGAATCAGATAGCGACGAGCAACGCATCGCCCGAGAAATCGTCCTTCGACAAAAGCGACTCGAGCAACACCCGCGATTTCCTGTCGATGATACTGGACAACGAAATGACCTCGCCGTCCGCGGAAATGGACAACTTGAGGTTGTCGTCGCCGGCGAGCAATCGCGACAACAATAATGCAAACGAGACCAATGACTGCTTTCCACCGATGAGCAGCAACGCCGCTGCGGTCCAAGtggatcatcatcatcatcatcatcatcatgatGATATGGACGAGACGTTCAACGGCAATAATCTGTCGACCCTGCAGAACATCAACGAAGACTCGCTCAAAGAACTGCTTAATAGTATCGCTGATAAATAA
Protein Sequence: MCARLLACPLCSQPGFTTLDSLRAGLVSVATRPLACPVCNEVLLGIDKLTIHLFGHTVSSGNTPVGGGNESAKFIDNANNAQIVRNAIQSWNVLDTSNVQVKDSSRDNTGSGIYIPIDEIENFRNLTTIKDGNGIIPMQSTQTATNAPSQVILLQNVGSQSKLFSADLMDPMVKPHEQANLYQTIQTATAVSSNDITEPNPNADLIEIGVPNDVVELDKNTQTSWSENISPAETSSSTFPQRSHTDRLEELVKSAQITSSPLGTFHEAYDCSRPESPKVIEISAATSSASKPTIKSTQILAPGERMERCNICGLSFPGRNVLILHKQLAHMIKEKDANLSPDDLMKNYPCHLCTKVFKMRGSLMVHMRVAHPGVNMPRAKPVPEPIEEPPSDEPEGNYICPTCGKSFKKEHQVTQHIKIHDMKQFECDVCSKMFTTKYFLKKHKRLHSGEMPYKCSICDKTFTFQQSYHKHRLYHKDDKPHTCNTCGRSFKELSTLHNHERIHTGEKPFSCETCGKCFRQRVSYLVHRRIHTGAMPYECLACGKSFRYKVSQRTHKCPMQPQDESEQQSGEASQASMDNDNSEMQETPEISSQDEHSMDDSVTSEDNQYILVLGNDGQHMLKKKSEMDNESNKVSSTSERTDKRNNDENNGIMENMWSEEQTGQMEFKESSESKNEDAMVNANLWSESFDGKSDNQNDNSNDLWNQIATSNASPEKSSFDKSDSSNTRDFLSMILDNEMTSPSAEMDNLRLSSPASNRDNNNANETNDCFPPMSSNAAAVQVDHHHHHHHHDDMDETFNGNNLSTLQNINEDSLKELLNSIADK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -