Basic Information

Insect: Galeopsomyia nigrocyanea
Gene Symbol: -
Assembly: GCA_035047105.1
Location: JAWWMK010003389.1:43229-53144[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7.7e-07 0.00012 23.4 1.0 1 19 72 90 72 93 0.95

2 14 0.0049 0.8 11.4 4.2 1 19 100 118 100 121 0.94

3 14 0.00072 0.12 14.1 1.7 1 20 163 182 163 184 0.95

4 14 0.0013 0.21 13.3 3.7 3 21 194 212 192 213 0.93

5 14 0.00023 0.038 15.6 2.5 1 19 231 249 231 251 0.97

6 14 0.006 0.98 11.2 6.8 1 23 260 283 260 283 0.97

7 14 9.7e-05 0.016 16.8 1.7 1 20 357 376 357 378 0.95

8 14 1.1 1.9e+02 4.0 8.0 1 23 386 409 386 409 0.96

9 14 0.0044 0.71 11.6 0.3 1 21 464 484 464 485 0.94

10 14 0.037 6.1 8.7 5.4 1 22 493 514 493 514 0.95

11 14 2.5e-05 0.004 18.7 1.8 1 21 568 588 568 589 0.96

12 14 0.076 12 7.7 9.4 1 21 597 617 597 622 0.92

13 14 0.00021 0.034 15.7 1.8 1 21 655 675 655 676 0.96

14 14 0.11 17 7.2 9.7 1 23 684 707 684 707 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7.7e-07	0.00012	23.4	1.0	1	19	72	90	72	93	0.95
2	14	0.0049	0.8	11.4	4.2	1	19	100	118	100	121	0.94
3	14	0.00072	0.12	14.1	1.7	1	20	163	182	163	184	0.95
4	14	0.0013	0.21	13.3	3.7	3	21	194	212	192	213	0.93
5	14	0.00023	0.038	15.6	2.5	1	19	231	249	231	251	0.97
6	14	0.006	0.98	11.2	6.8	1	23	260	283	260	283	0.97
7	14	9.7e-05	0.016	16.8	1.7	1	20	357	376	357	378	0.95
8	14	1.1	1.9e+02	4.0	8.0	1	23	386	409	386	409	0.96
9	14	0.0044	0.71	11.6	0.3	1	21	464	484	464	485	0.94
10	14	0.037	6.1	8.7	5.4	1	22	493	514	493	514	0.95
11	14	2.5e-05	0.004	18.7	1.8	1	21	568	588	568	589	0.96
12	14	0.076	12	7.7	9.4	1	21	597	617	597	622	0.92
13	14	0.00021	0.034	15.7	1.8	1	21	655	675	655	676	0.96
14	14	0.11	17	7.2	9.7	1	23	684	707	684	707	0.97

Sequence Information

Coding Sequence: ATGACAAGAAGACCAAAGAAGCTTGTTCGTCGTGTAACCGACCGATTTGTGATTACCATCGTCTATTATTTTGCAAAGACGTTTGCCGAATTCTTAGCAACGACCGACTACAATCCATCGCTACTTCATCCACAACAATTGACACTATTCATCGCTCCCGCATCATCGACAGTGACCAACGTAAAAATTGAACCTTTcgaatcgttgaaaaaatataagtgcACCAAATGCGGCAGAGCGTACACCCgaaaagataatttaaaacGTCATTCCAACGAGTGCGGCAAAGGTCCGAGTTTCTTCTGCGATCAGTGTGATTTCTCTTGTAAACGAAAGACTAATCTCATCAGACACAATCACATCAAGCAAGAAACTGAAGAAGATCCTCTAGCGCCGGATCATGAGTTCAAACTACGCATAGTAGACGTAACTTCGCTTCAAAAACCTCcaaaaaacagaagaaaacaaGCGAAACGTAAAATCGAATACAGATGCACCCAATGCAACAAAGTCTACGCGAACAAACAAGGACTTCGTGATCACAAGCACTACGTGTGCAACGTGGAACCAAGTCTTTTCTGCAAGTACTGCGGCTATTCctgtaaaaagaaatcaaactTCGACAGACACGTCAAATCACGAATTCGTACCGGTGTATGCCCgaagaaaaaatctgaaaaaccaaaaaagtaCAAGTGCAAAACTTGCGGAAGGAGTTACGTGctgaaaaaacatttaacgCGGCATAATAGTTACGAGTGTGGTCAGACTGCGAACTTCTCTTGCTGTCATTGCTCGTACAAAAGCAAACAGAAGGTCAATCTTGCTAGACATATCAAGTCAAAACATCCTGAGAAATTGCcaaaaagaaacatttcaCAATGGCAGGGACGAAGCTCTACAAGTGTGACGGATGTGGCAACCTTTACAGACATCATGCAAGTTGGCGTCGTCATCAGAAAAATCAAAACAGAAGATGGCTTTGGATTACGCATCGTGAGCATCGCATCGTTATCTCGTCCACGTCGGGTGTTACCCGGGAATTCAACTCGTAATCCCGATACTAAGTTCGAGTGCGACATGTGCGGTCGTACATACAAGTACGTACATAACCTCAAACGACATACCACCTACGAATGTGGAAAGGAGCCGAGTTTCTTCTGCCTATATTGCGATTATCGATGCAAGCAAAAGTGTTCGATGGACAGCCATGTCAAGACTAAGCATAAGGTTTCACTTTCGGCTAAAAAGCGACCCAGCACATCAAAACGCTTTGCACGACCCATTTATGTCACTAAGAAATCTCAACGACAATTATCAACTCCAGATTTCCGTATAGTAGACGTCAAGTCGCTTCTACACGCGAAATCCAACAGCAAGACAAACCATTATCAATGTACCGAGTGTGGCAAGCTGTACAGAGGCAGACAAGGGTTGTGGTATCATCGGCAACGCGAATGTGGTCAAAAGGCTAAATACTTCTGTGAACATTGCGATTTCTTTTGTAAATCACCTCAGGCTTTTAAGAAACATCTGAAGAGAAGATTGGAAACTGACTTCATGTTCGCCGAGTGTTACGACCCAGCAGAAATCTCCTACGACGAAGTTGGTCTTCGTATCGTCAAATCGGAATCATTGGCGTATCGGCAGAAACACGACATCGTTACTCGTGTCGTTGGTGGTAAACCCTGCAATTACGACTACGTTTGTCATCAGTGCGGAAAATCTTACATGCGTATCAACACGCTCAAGAGGCATATGAAGTACGAGTGTGGTAAACCCGCGAGTTTCTGCTGCAGTTTTTGCGATTACAGATGCAAACGGAAGGATAATCTTAGATATCATATTGTCACGTGTCAGAAACATGGCGAACAGTATATCTTACCCATAGACAATTATTACAATCAGCAGATTTTACCAAGAGCTTTCGAAACAATGCGCGACTGTACGGGCCCAGGAACTTTCAGATGCGAAGGTTGCGGGAGTATTTACAAGCAAAAGTGCAGTTTGAATCGACACATTCGCTACGAGTGCGGAATTATGCCGAGGTTCCATTGCTTCTATTGTAACTTCAAGTGTAAACAAAAGGCTTATCTCAAGACACACACAAAGATGCGTCACAAAAATCAGCCTTTCAAATACTTCGACAGCCAAAGTGGCGACGTGCAGAAAACAATGTCCAGCTAA
Protein Sequence: MTRRPKKLVRRVTDRFVITIVYYFAKTFAEFLATTDYNPSLLHPQQLTLFIAPASSTVTNVKIEPFESLKKYKCTKCGRAYTRKDNLKRHSNECGKGPSFFCDQCDFSCKRKTNLIRHNHIKQETEEDPLAPDHEFKLRIVDVTSLQKPPKNRRKQAKRKIEYRCTQCNKVYANKQGLRDHKHYVCNVEPSLFCKYCGYSCKKKSNFDRHVKSRIRTGVCPKKKSEKPKKYKCKTCGRSYVLKKHLTRHNSYECGQTANFSCCHCSYKSKQKVNLARHIKSKHPEKLPKRNISQWQGRSSTSVTDVATFTDIMQVGVVIRKIKTEDGFGLRIVSIASLSRPRRVLPGNSTRNPDTKFECDMCGRTYKYVHNLKRHTTYECGKEPSFFCLYCDYRCKQKCSMDSHVKTKHKVSLSAKKRPSTSKRFARPIYVTKKSQRQLSTPDFRIVDVKSLLHAKSNSKTNHYQCTECGKLYRGRQGLWYHRQRECGQKAKYFCEHCDFFCKSPQAFKKHLKRRLETDFMFAECYDPAEISYDEVGLRIVKSESLAYRQKHDIVTRVVGGKPCNYDYVCHQCGKSYMRINTLKRHMKYECGKPASFCCSFCDYRCKRKDNLRYHIVTCQKHGEQYILPIDNYYNQQILPRAFETMRDCTGPGTFRCEGCGSIYKQKCSLNRHIRYECGIMPRFHCFYCNFKCKQKAYLKTHTKMRHKNQPFKYFDSQSGDVQKTMSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -