Gnig012541.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- -
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010003637.1:11479-31128[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.17 27 6.6 1.8 3 23 91 112 89 112 0.95 2 14 0.00015 0.025 16.2 0.1 1 20 235 254 235 256 0.95 3 14 0.0001 0.017 16.7 3.6 3 23 295 316 294 316 0.97 4 14 1e-05 0.0016 19.9 2.2 1 23 336 359 336 359 0.97 5 14 0.0062 1 11.1 2.5 1 23 365 388 365 388 0.93 6 14 0.037 6 8.7 0.5 1 21 407 427 407 428 0.95 7 14 0.069 11 7.8 0.6 5 23 440 459 437 459 0.94 8 14 0.025 4.1 9.2 3.3 1 20 474 493 474 495 0.95 9 14 0.9 1.5e+02 4.3 6.6 1 23 502 525 502 525 0.94 10 14 0.00031 0.051 15.2 3.2 1 21 596 616 596 617 0.96 11 14 0.0073 1.2 10.9 0.7 1 23 625 648 625 648 0.95 12 14 0.00034 0.055 15.1 1.5 1 21 663 683 663 684 0.96 13 14 1.8e-05 0.0029 19.1 2.7 1 23 692 715 692 715 0.94 14 14 6.5e-05 0.011 17.3 3.1 1 21 724 744 724 745 0.95
Sequence Information
- Coding Sequence
- AtgcatattttcttttcacattCAGGCATAGAATTCTCGAGAGAGTTCGCGTCCTCGCAACCGAAATTACTAAAGCGGAGCGAACGCATCGTCCCTCTTCCTGCATCCTCATCTAACAAGAAATTGAATCGTTCCCGCGACAACAAGAGTGATTCTGATGAATCCATTCACCATCATGAGAAAAAGTCTAAAAGTAAAATCAGCGTAAAAATTTACAAGAGTAGGCGCGATTTGCAAAAGCGTGCAATGATCGTTCAACGTACTTTATTCTGTGGCTATTGCAGTTACTCCAGCAAATGTAAAGATAATCTTGCCACGCACATTATAATGAAACACGAACAGGCCACAAAGGCTTACGTAGATTCAGATGTAGAGGTCTTGGAAGAGTTAGAGCCCCCGCCACCGAATGTATTAAAGCCGTGCGAACGTATCTTCCCTCAGGCACCCTCATCTAACAAAATAAGTTTCTTCAACGCACATCAAAGAAGCATCTGCAACAAGAAATCTGATCTTTTCAATAACGACGACAGTGGCTCTGATAAATCCAATgaccatttaaaaaatgtcaattttagTTCCGAAGAGAAGTCTTTAAGCAAAGAAATCGAAATTGGGGAAGAATTCAAGTACTCGCCACCGTATGAATTCCAGCAGCGCGAAGGTATCACCCCACTGCCATCTTCATCCGACAGTGGAAGTGGCTACAAATGTCCTACTTGCGGAAAAACTTACGAAACCGAGAAAGTTTTGAATGCTCACCTTACAAACGTGTGTGGCAATTTTGTTTGCAATAGTAGAAATAACTTTGGCTCGGATACTGAAAACCACACGCATTTGCAAAGGCGTGTTACCATCGCTCGCGACGCTGCTCCCACTTTGCTCTGTGAACACTGCAGCTACTCTTGTAAGGATAAATCAAGTCTTATCAGACATATCAAAATAGAGCATGACCTTTCAAGCAacgtatataagaaaaaaattagttatgCCGAACCTGGAGTGGAGCACAAATGCAAATTCTGCGGTAAAATCTACAAGTACAGAGGAGATTTGAATAGGCATGTAAAGGTTGCTCACGGCACAGCTCCTACTTTTTTCTGTGGTTATTGTAATTATTCTAGCAAAATAAAGTATCATCTTGCCAGGCACATAGGATCGAGACACGATCCTTCGAAGAAGCTACGTGAAAATACCAATGAAACACAGTTGGTGAAAAACTATGTATGCGGGACTTGCTTCAAAAGATACAAATGGAAAGACAGTCTGTCTCGACATGAGAGATGGGAATGTGGCAAACAACCAGGTTTCTTCAGTGCGCACTGCGAATTCGCCAGCAAACTTAAAGACAATCTTGTGGCACACATGAGAAGGAAGCACGACGTATCAAGCAGTATTGGATTGAAAAATCCtaagaaattatataaatgcGAAACTTGTTGTAGAAGCTTTGAATCGAAAGAGTCTTTGAGGGCACATAAATATAAGTGCAGCCAGAAGTCGAGATTTGATTGTAAACACTGCACTTACACCAGCAATCGGAAATGCCATATTGTCAAGCACGTCGAAGTAATGCACGGTCCTTCAAAGGGTACTGCGTCGAAAAAGCTTTCAACGCCGTACAAGTTTTGCTTAATGATTCGTAAAGCTGATTCACATAATTTTCACGTTCCAGAAATTGACGTTGGAGAGGAGTTCAAATATTCACCgtttgaaaaacgaaagtCGACAGAGCAAAATGCTCTTTCAGTTGACGTGTCGGACAAGAAACGTAACAGCGAAAACGAGTACAAATGTGCAACCTGCAATAAAAGCTATAAATATAAGAAGAATCTATACagtcatttgaaatttgaatgcGGCAAGCAGCCAGGATTTTCTTGCGATCGCTGCAATTACGCCAGCAAACGGAAAGCTGATCTTGACATGCACCTTAAAGCAAAACACAATGCTGCAAAGGGTGCTCAGTTGAAAAAGCCTACAAAATCGTTTAAATGCGAGACCTGTAATAAAGCCTACGCTTCTCAAGGGGCATTGTGTACTCATAGAAAATACGAGTGCGGCAAGCAGCCAAGttttctttgtaaatattGTGACTATTCTTCCAAGCAAAAATCGAATTTAACGAGTCACATTAAAAATCGTCACGAGGTAAATAATTCTGAGCCTAAGCACAAATGCTCCAATTGTGGTAGAAGCtacaagtacaaaaaaaatctaacatACCACATCAACTATCGGTGTGAAAAATGA
- Protein Sequence
- MHIFFSHSGIEFSREFASSQPKLLKRSERIVPLPASSSNKKLNRSRDNKSDSDESIHHHEKKSKSKISVKIYKSRRDLQKRAMIVQRTLFCGYCSYSSKCKDNLATHIIMKHEQATKAYVDSDVEVLEELEPPPPNVLKPCERIFPQAPSSNKISFFNAHQRSICNKKSDLFNNDDSGSDKSNDHLKNVNFSSEEKSLSKEIEIGEEFKYSPPYEFQQREGITPLPSSSDSGSGYKCPTCGKTYETEKVLNAHLTNVCGNFVCNSRNNFGSDTENHTHLQRRVTIARDAAPTLLCEHCSYSCKDKSSLIRHIKIEHDLSSNVYKKKISYAEPGVEHKCKFCGKIYKYRGDLNRHVKVAHGTAPTFFCGYCNYSSKIKYHLARHIGSRHDPSKKLRENTNETQLVKNYVCGTCFKRYKWKDSLSRHERWECGKQPGFFSAHCEFASKLKDNLVAHMRRKHDVSSSIGLKNPKKLYKCETCCRSFESKESLRAHKYKCSQKSRFDCKHCTYTSNRKCHIVKHVEVMHGPSKGTASKKLSTPYKFCLMIRKADSHNFHVPEIDVGEEFKYSPFEKRKSTEQNALSVDVSDKKRNSENEYKCATCNKSYKYKKNLYSHLKFECGKQPGFSCDRCNYASKRKADLDMHLKAKHNAAKGAQLKKPTKSFKCETCNKAYASQGALCTHRKYECGKQPSFLCKYCDYSSKQKSNLTSHIKNRHEVNNSEPKHKCSNCGRSYKYKKNLTYHINYRCEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -