Basic Information

Insect: Galeopsomyia nigrocyanea
Gene Symbol: -
Assembly: GCA_035047105.1
Location: JAWWMK010000008.1:1990520-1993396[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.064 10 7.9 0.4 6 21 12 27 6 28 0.85

2 14 7.2 1.2e+03 1.5 0.0 2 20 34 52 33 53 0.87

3 14 1.2 1.9e+02 3.9 2.2 1 21 224 241 224 245 0.68

4 14 5.2 8.5e+02 1.9 1.8 1 19 369 387 369 389 0.94

5 14 4.5e-05 0.0074 17.8 2.7 2 23 395 416 395 416 0.98

6 14 0.005 0.81 11.4 2.5 1 23 428 450 428 450 0.95

7 14 0.31 50 5.8 0.1 1 10 470 479 470 491 0.80

8 14 0.018 2.9 9.7 0.3 3 23 498 518 496 518 0.92

9 14 5.3e-05 0.0086 17.6 4.8 1 23 571 593 571 593 0.99

10 14 2.2e-06 0.00035 22.0 3.9 1 23 599 621 599 621 0.97

11 14 0.00014 0.023 16.3 4.6 1 23 627 649 627 649 0.98

12 14 1.6e-06 0.00026 22.4 0.8 1 23 655 677 655 677 0.98

13 14 7.1e-05 0.012 17.2 0.5 1 23 681 703 681 703 0.99

14 14 0.00011 0.017 16.7 0.2 1 23 711 733 711 733 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.064	10	7.9	0.4	6	21	12	27	6	28	0.85
2	14	7.2	1.2e+03	1.5	0.0	2	20	34	52	33	53	0.87
3	14	1.2	1.9e+02	3.9	2.2	1	21	224	241	224	245	0.68
4	14	5.2	8.5e+02	1.9	1.8	1	19	369	387	369	389	0.94
5	14	4.5e-05	0.0074	17.8	2.7	2	23	395	416	395	416	0.98
6	14	0.005	0.81	11.4	2.5	1	23	428	450	428	450	0.95
7	14	0.31	50	5.8	0.1	1	10	470	479	470	491	0.80
8	14	0.018	2.9	9.7	0.3	3	23	498	518	496	518	0.92
9	14	5.3e-05	0.0086	17.6	4.8	1	23	571	593	571	593	0.99
10	14	2.2e-06	0.00035	22.0	3.9	1	23	599	621	599	621	0.97
11	14	0.00014	0.023	16.3	4.6	1	23	627	649	627	649	0.98
12	14	1.6e-06	0.00026	22.4	0.8	1	23	655	677	655	677	0.98
13	14	7.1e-05	0.012	17.2	0.5	1	23	681	703	681	703	0.99
14	14	0.00011	0.017	16.7	0.2	1	23	711	733	711	733	0.97

Sequence Information

Coding Sequence: ATGGGTTCGATAAGTTTAATGTGCCCCATGTGCTGTCAAGAGACTTTTAGCAACTTGGAATCACTCAAGGACCATTTGCTTAGTGTAACAAATAATCTCTATTGCCCTGGATGCTCTGAACATATTCCTTCAGTGCCTGCGTTGATTCAACATTTGGATTGTTGTGGAACAACATTCAgccaagaagaaaaacaacatgCGCAGTTGGAGTGCGATAGTTTAGTAActagtgaaaatgaaaaagtaccAGATATTTTGATGGAGGGTGCTGAAGATGAACTAAATGACAGCTTTTTAGCTACAGTCAATGAAGATGGAGTTATGATTATCGGTGAAGGAAGAACAATACAAGTAGATGAAAATGgtGATATTCAAGTCGTGGAAAAATCAAGTTCCGCAAATGCAATATCCCATTCTAAAGAGGCTATGATGAATCACGTAGAAGATGATACAGAAATTGGTGTATCTTCCGATCCAACAAATCAAAAAGAGCAGATACATTCTGCAAAACAAGAAGTATCCATGCCCAATATATCAGATGATTCAGAAATGTTTGACGATAACGAGCAAACTTACATACAATTTTCGGAAATGGATGATATGGAGCTTGAAGAAGAGTCTAGAGAAGAAACAGAAAATGTTGAAGATCAgGGAGACGGAGATGTTATGTTCAGTTGCAGTGCATGTGGAATAAGTTTTACCAATGTAAAGGACCACTTGAGGGATCACCATCACGGAGAGGAAGTAGTGTTAGAAATGAACGAGCAACAGTTGAATGAAATAGAAACATCTACTTCAAAGCCATCGTTGCCGTCTACTCGTATTACAAATACAAACGCAGGCACGTCGTCAAAAGTGTCACCAACAAACATTATCAGACCAGCTCTAAGACAGAGGCAATCGATGAACACATTGAGAACTGAAGAGTGCATCGACAGTGACGGGAGGACGTTTACCCGAAAAGTTGTACAAATAGAAAGATTTTGGGATAAGTCACCAGTTACATTGTCATCGACAAAAGCTCCAAtgatcgaaaaatttttctccaacGTCGAGGGCGTCAAAGTCAGAGATAAGAGTATAACAGTTGCCCCGACGAAAATGTACAGATGTAATCAGTGCCTAGGACAGTTCGCCAAGTTGACCGACTTTCGCGTTCACAATTGCTTTCAAGTGACCAATCGTTGTGAGAAATGTGACTTGACCTTTAATTCGGTGAGATCATTGCACGCGCACATGAGGACTCATCGGGAGGTGAACGACTATCCTCctctaaaaattttcttgtgtCAAATTTGCGGAACCGAGTTTTTGACGCACAAAAGCTTACAACTGCACAGGAGGATGCATCAGCCGGTCAAGTCGCGTCACGTCGACGCTCCCGAGGGCACGGTCGAGGAGGATAAATTCGAGTGTACCGAATGCgGAAAAGTTCTCGCAGAAGCGTACAGAGGAGCGCACATGGCCACGCACGAAGGCGACTCGATCACTTGTATTATTTGCAATCGGAAATTCGATTCCGAGCAGAGCTTGCAAATGCACAGGGCAGTTCATGCCGATTTAATTGTCGATCCTTTGCACGGATCGTCCAATGATATTATAATCCCTGATATACAAGATCCCGTAGAGCCGATATTGGATGGCAATACCTCGGCAAGTGAAATAGTTAGCAGCGAGAGAGCAGACGAAGAGATTGCCATTCAAAAGCCTTATCAGTGTCAGCACTGCGGTCGTAGATTCACGAGACCTCACGAGAAAGTTAAGCACGAGAGGATACACACAGGAGAGAAGCCGCATATTTGCGAGGTCTGTGGTAAAACATTCCGAGTGTCCTATTGCTTAACTCTCCACATGCGTACTCACACCGGTGTCCGACCGTACGAGTGTCAGCATTGTGGCAAGCGTTTCAAGGCATCCTCCGTGTACAACCATCACCTTCTGACTCACGGCGACGAGCGCGCTTACACCTGTCCGTACTGCCCGAAAACATTCAAGACTCGGGTGCAGCTGGCCGGTCACAAGAACAGCCACACCAAGCCATTCCGCTGCACCGAGTGCTCGCGACCGTTCGCCTCGCTCTACGCGGCTCGCTCGCACATGCAGACTCACAAGAAGGacaacaatttgaaattcagcTGCAACATCTGTGGCGCCTCGTACGGACGAGCTTTCGCTTTAAAGGATCATCTGAAGCAGCACGAAAACGACCATTCGGCTACGTTACCACCGGAGGCCGCGAGAGAAGAGGAAGTACAAGTGGATTTCTTGCTgcaagacgacgacgaggtcGTTGGCGATGAGCTGATTGTGCCCTCGCCGCCTCCACCTCCGTGCGAACCGATAGAGAGTGTCGAACTGATCGAGTAA
Protein Sequence: MGSISLMCPMCCQETFSNLESLKDHLLSVTNNLYCPGCSEHIPSVPALIQHLDCCGTTFSQEEKQHAQLECDSLVTSENEKVPDILMEGAEDELNDSFLATVNEDGVMIIGEGRTIQVDENGDIQVVEKSSSANAISHSKEAMMNHVEDDTEIGVSSDPTNQKEQIHSAKQEVSMPNISDDSEMFDDNEQTYIQFSEMDDMELEEESREETENVEDQGDGDVMFSCSACGISFTNVKDHLRDHHHGEEVVLEMNEQQLNEIETSTSKPSLPSTRITNTNAGTSSKVSPTNIIRPALRQRQSMNTLRTEECIDSDGRTFTRKVVQIERFWDKSPVTLSSTKAPMIEKFFSNVEGVKVRDKSITVAPTKMYRCNQCLGQFAKLTDFRVHNCFQVTNRCEKCDLTFNSVRSLHAHMRTHREVNDYPPLKIFLCQICGTEFLTHKSLQLHRRMHQPVKSRHVDAPEGTVEEDKFECTECGKVLAEAYRGAHMATHEGDSITCIICNRKFDSEQSLQMHRAVHADLIVDPLHGSSNDIIIPDIQDPVEPILDGNTSASEIVSSERADEEIAIQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHICEVCGKTFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARSHMQTHKKDNNLKFSCNICGASYGRAFALKDHLKQHENDHSATLPPEAAREEEVQVDFLLQDDDEVVGDELIVPSPPPPPCEPIESVELIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00326575;
90% Identity: -
80% Identity: -