Gnig009092.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- -
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010000546.1:8048-11611[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.003 0.49 12.1 0.7 1 23 244 266 244 266 0.94 2 11 0.11 18 7.2 2.4 1 23 271 294 271 294 0.95 3 11 1.1 1.8e+02 4.0 6.3 1 23 338 360 338 360 0.96 4 11 3.4e-05 0.0055 18.2 0.7 2 23 503 524 502 524 0.97 5 11 4.9e-06 0.0008 20.9 1.7 1 23 529 552 529 552 0.94 6 11 6.9e-06 0.0011 20.4 0.1 1 23 584 606 584 606 0.98 7 11 7.4e-07 0.00012 23.5 0.8 1 23 616 638 616 638 0.96 8 11 5.3e-06 0.00086 20.8 0.8 1 23 644 666 644 666 0.98 9 11 4.7e-06 0.00077 20.9 0.3 1 23 672 694 672 694 0.98 10 11 8.6e-06 0.0014 20.1 2.6 1 23 700 722 700 722 0.98 11 11 3.5e-05 0.0057 18.2 0.4 1 21 728 748 728 749 0.95
Sequence Information
- Coding Sequence
- ATGATGGAGGCGGTGAAGATCTGCGACGTCGACCTCGACGACGATATTTGTCGGCTTTGTCTGGCCAAATGTGACCCTGGCGAGGTCAGACACTGGGGCCTTTTCAATACCGATTTGCCACAGAAACTCATGGCGTTCGTTGCTGTACAGCTTCAAGAAAATGATGGCTTACCCACATTGATTTGTACAAATTGTCGCAATCTGGTCTACACATCCTACAATTTCAAGtgtcaagtagaaaaaagtgATCATGATCTCCGCCAAGCGCTATTACTAAAGCAGTCTCCTAAAGACTGgcaaaatattacaaatgtgAAACCAATGGAAGGTCTGAGTAATGTAGATATAATAGTACCTTGCTATCAGAAAAGTTTTAATTCTTGCATGTCAATGCAAGACGAGCACAGTGCAAGCAATCATGAACagtttatatttgaaatagaaaacAGTTGTAATTTAGGTAGTGATACTTATAAAAAGGAAGATGTGATTGTATTGAGTAATTCAGTTGATGCAGTGAGTCAAATAGAAAACCATGCACTACAAATGAGTAATGGAATGTCTAGGTCTGACACTGACAATAATGTAATTCTGACATTTGGAACACAGTATGATATTAGAGATAATGTCATAGAAAAACCTGCTGTTGGAAACTTTCAACCACAAATTCTTCAAGAGAAATCAAATCACAGTGATGATGACAAACCTTTAATATTAAGGACTAAGCGTCATAAGTGcaattattgtataaaatcgtttgctaatttaaatttgttaGCAAAGCATGCAGtgattcacaaaaaaatagtttacttGTGTTGTATGTGCAATGAAGAGTTCAATTCAATGGAAAGTGTCCAAAATCATCATATCACTATTCACAGTTTGCAAGTGGATAAGGATAAAATAGTAGTTAAAGTCAAATGGCCAAAAGGAAATagccaacaaaaaaatgataatacgAGAAATGAGAATGCAGTATCTCAAAATGTAAAACATACTGAAGCTAAATTTTCTTGTGAAATTTGTTTTAGACAGTTTACTCATTACAGGACATACAGTTTCCATATGAAAAATCATCCAGAGTACCACAATAAAGTATTGCCGAAGAATAATCATAATTTAACTACTGACAAATCTAGTATGCATTTAGGATCTGACAATAGTTTacaatcaaaaattgaaactggTCCTAATTTGGTGAATATAAGCAATTCGTCTGATTTAGAAGAATTTGAACATCTATCTGATCCAGATAGTTTAGGAGTAAAGTCAAGCACAGACATTATTTCACAACCCACCAGTGCAGATCTCGACTTGCAAGCAAGTTTAGGAAGTAACTTTGATGAGAATTTATGCAGGATAGGAAgtgaaaatagtaaaaatacgtcggaaaatGATATTCCCGACTTTAATGATgattacgacgacgacgacgacgatgatgaagAAAATGATGATATTGCTAAAAAAACCGACGATATGTTCAAAGAAAATTCGAGTATTCAATGCAAGCAATGCGGAAAACTTGTTGCTACTATGAGGAACCTCAAGAGGCACATGCTAACTCATTCTGGTCTCAAACACAACTGCTCAATATGTGgtaaagatttttcaagaCCGGATAAATTGCGCGAGCATCAGCAATTGAAACATAAGGACGAGGTATTTGGAAAATCAGATTCGGACATCGAGTCTGATGATGAAAATACGGGATCTAGTCGAAAAAAGGACAAAAAGAATCGGCCTTATAAATGTGCGATATGTCCAAAAGCATTTGCTCAAGCCCAGTCATTAACGAATCACGTGGAACGGCACAAACGCGATAAAGACGTACAAAAGCGATACTTATGCGAAGTTTGTAGTAAATGTTTTGCTCAAAGTGGATCTTTAGTCGCCCATATGCGCACTCATACAGGCGTCAAACCTTACGTTTGCAACGTATGCTCAAGAGCTTTCACAAAAAGCACATATCTGCAGCTACACCTTAGGATTCATTCAGGAGAAAAGCCGTACGTCTGTCAGTATTGCAACCGAGCATTCGCTCGAGCCAATACTTTAGCGCGGCACTTGACGATGCACACGGGTGAAGCTAAATATCAGTGTCAGATCTGCTCAAAGTCCTTCAGAAGATTAACGTCGTTGAACGAGCACACTTTTACTCATACCGGGCAAAGACCTTATTCCTGCAAAATTTGCGGAAAGAGGTACAACAATGCTGGATCTTTGTATGCCCATACgaagaaatgcaaaacaatGCAAACGAGTGCAAATATAAATGATTATCCGGACGGCTTGGAATTGGCGGATAATGCTGTGCTCTCTCAGAGCGAAAATAACTCACCAACGGAGCAGCTTCTGATCTTTACAGAAGATAAAAAAGCCGAGATAATAACCGATGAAACCATTGCTGTTGAACCTTCGAGTTGTCAGTTTATGATCGCGAATATTCACGATCAGAAAACAATGTCGGTTAATATGATCGAGCCATTTATCATTCCGGAATCTGACGTTTACAGCATAACTTCGAAGCAATTTAAAACGCCGTATTACGGGTTATATCcaagtatgtaa
- Protein Sequence
- MMEAVKICDVDLDDDICRLCLAKCDPGEVRHWGLFNTDLPQKLMAFVAVQLQENDGLPTLICTNCRNLVYTSYNFKCQVEKSDHDLRQALLLKQSPKDWQNITNVKPMEGLSNVDIIVPCYQKSFNSCMSMQDEHSASNHEQFIFEIENSCNLGSDTYKKEDVIVLSNSVDAVSQIENHALQMSNGMSRSDTDNNVILTFGTQYDIRDNVIEKPAVGNFQPQILQEKSNHSDDDKPLILRTKRHKCNYCIKSFANLNLLAKHAVIHKKIVYLCCMCNEEFNSMESVQNHHITIHSLQVDKDKIVVKVKWPKGNSQQKNDNTRNENAVSQNVKHTEAKFSCEICFRQFTHYRTYSFHMKNHPEYHNKVLPKNNHNLTTDKSSMHLGSDNSLQSKIETGPNLVNISNSSDLEEFEHLSDPDSLGVKSSTDIISQPTSADLDLQASLGSNFDENLCRIGSENSKNTSENDIPDFNDDYDDDDDDDEENDDIAKKTDDMFKENSSIQCKQCGKLVATMRNLKRHMLTHSGLKHNCSICGKDFSRPDKLREHQQLKHKDEVFGKSDSDIESDDENTGSSRKKDKKNRPYKCAICPKAFAQAQSLTNHVERHKRDKDVQKRYLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRIHSGEKPYVCQYCNRAFARANTLARHLTMHTGEAKYQCQICSKSFRRLTSLNEHTFTHTGQRPYSCKICGKRYNNAGSLYAHTKKCKTMQTSANINDYPDGLELADNAVLSQSENNSPTEQLLIFTEDKKAEIITDETIAVEPSSCQFMIANIHDQKTMSVNMIEPFIIPESDVYSITSKQFKTPYYGLYPSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -