Gnig001535.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Galeopsomyia nigrocyanea
Gene Symbol
-
Assembly
GCA_035047105.1
Location
JAWWMK010000001.1:13708991-13716545[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 7.2e-06 0.0012 20.4 1.0 1 23 194 216 194 216 0.98
2 30 0.0031 0.51 12.1 1.9 1 23 239 262 239 262 0.96
3 30 0.00029 0.048 15.3 1.6 2 23 269 291 268 291 0.96
4 30 0.0004 0.066 14.8 3.4 1 23 311 334 311 334 0.97
5 30 0.016 2.6 9.8 0.0 2 23 425 446 424 446 0.97
6 30 0.021 3.4 9.5 0.3 2 23 453 475 452 475 0.90
7 30 0.00014 0.022 16.3 0.1 1 23 537 560 537 560 0.96
8 30 0.084 14 7.6 0.4 1 23 566 589 566 589 0.96
9 30 0.14 23 6.9 1.5 1 23 602 624 602 624 0.97
10 30 7.3e-05 0.012 17.2 0.3 3 23 667 688 665 688 0.95
11 30 0.023 3.8 9.3 0.9 2 23 750 773 749 773 0.94
12 30 3.6 5.8e+02 2.4 0.0 2 23 782 804 782 804 0.84
13 30 0.044 7.2 8.4 0.0 2 23 811 833 810 833 0.95
14 30 1.5e-05 0.0024 19.4 1.2 1 23 841 863 841 863 0.98
15 30 5.5 8.9e+02 1.8 2.1 2 23 915 938 914 938 0.93
16 30 0.00024 0.039 15.5 3.3 1 23 941 964 941 964 0.97
17 30 0.01 1.7 10.4 0.4 2 23 971 993 970 993 0.95
18 30 7.7e-05 0.012 17.1 3.2 1 21 1021 1041 1021 1042 0.94
19 30 0.0031 0.5 12.1 1.8 2 23 1056 1077 1055 1078 0.93
20 30 1.5 2.5e+02 3.6 2.5 1 23 1081 1103 1081 1104 0.95
21 30 1.1 1.8e+02 4.0 0.2 2 23 1142 1164 1142 1164 0.95
22 30 3.3 5.4e+02 2.5 0.0 2 23 1171 1193 1170 1193 0.88
23 30 0.26 42 6.0 2.7 2 23 1202 1224 1202 1224 0.96
24 30 0.3 49 5.8 0.8 2 23 1230 1252 1230 1252 0.93
25 30 0.015 2.4 9.9 0.1 1 23 1320 1343 1320 1343 0.96
26 30 0.0092 1.5 10.6 3.0 1 20 1370 1389 1370 1391 0.94
27 30 0.37 60 5.5 1.9 2 23 1491 1513 1490 1513 0.94
28 30 1.3 2.1e+02 3.8 0.1 2 23 1520 1542 1519 1542 0.94
29 30 0.35 57 5.6 1.8 1 23 1553 1575 1553 1575 0.97
30 30 0.007 1.1 11.0 0.1 2 21 1583 1602 1582 1603 0.92

Sequence Information

Coding Sequence
ATGCAATCGATTTTGGATGCTATTGCCGAACACGACAGACTGCCGAAATGCCTGTGCTATCGCTGCATGTACAATTTGGAAAACTTCTACGACTTCAGAACGGCATGCGTCAACGCGGTTGCTATGCTCGAGAGATGTTTGCCGCCGGAAaacacgaGGCCGGAAATCAAGCAGGAAGAAGTCGAGCCGTACTCGGAGCTGCGAATGGAGTTGCTGAAAGACAAAGAGACTATGCCGATGTTGATCTCAGAAGCACCGGTGGTTAATCCAAACGCAGCGCTCGGTACACCACCAAGACTCAGATCCGACGGTGAAGCCGATGCCGAAGACATTCACAATCACGTTGCCAGTCCACACGACGAaccTCTCGACGACCACGACGATCACAAGTCGGACGAGTACGAGATGGACATGGAGACGAATCCAAGCGACTTCCTGGAGATGAGCGCACTGGTGCCTGAAGACGAAGGTGGTTTACCACAaccgcagcagcaacaacgacAGCAGCgacggcaacagcagcaacagcaacagcagcagcaacagaaaTTTCAACATCGCAACGAACAGCACGAGGTTTACGTGTGCTCGTTGTGCAACAAAGCGTTCAGCTCCAAAGGGCATCTGTCGTTGCACGCGAGGATTCACGTTGGCGCCGGTGACGTGATCGGCGAGAAAGTCATCACCGACGATCATACTTCCTTCAAGAGGCCCTATCAATGCGATCTTTGCAATAAATCCTACTCTACGGCTAAACATCGATGGGGACATGTCTCGACGACTCATCGaggCCATCCAGCAGTAACATGCGGTCACTGTTCACGTATCTACTCGACCCGAACGAATCTCGAGGAACACATCAAATCGCGTCACGCTGGTCAACCACCGCCGCCCGAGATTCAAGCCAATTACGTGCAACAGGATTCGCGATTCCAGTGCAAGACTTGTCCTAAGATGTACACCAACATCACTGATCTCAACAAGCACAGTCGTGTCTGTCATGCCTCGAATAGCCTCAATGTTCACAACTcaaAACTGAGAAACGCTTTAGATCCCAGTTCGGATTTATCGAGCGTGGATTCGGATTACGAGAACAAAGATTACAGGAGCGCTGAAGCGAAACTTGCCAAAAATCCACAGCTGACAATCCTCAAGCAAGCCTTGATCAAAGGAGAAAGCGTGAAGAGAGAGTACGACGAGAGACAGAAGATGCTGAGTAAAGCTAAGAAGCAGGCCAAAGTAGAAACCAATGATACGAACGGTAAACGATGGTACTGCGAGGTGTGCCCAGTGAACTTTGGCAGCGTTGATGAACTTCGCGAGCACGAGAAAACGCACGACGCCGACAAGCCTTTCATTTGTATTCTTTGCGAGAAAGACTTTGTGTTGAAGTCTTCGTTGAGCAGGCATATTTTGTCGTCACATGGCGTTGATCCAACGCCTCTTATCGAGAGCGAAAAGTGCTTGAAGAAGTCTGTATTAGAGGCTAATGCCAACCGGCCGCTTATAAAGCAGGAGGCTAATGATTCTTCGTCGCCCATGTCTGACaaCCTAGACGACGAGGAGCAAGAGAACGGCTACGAGATCAAGCCAGAGATGGAAACCGTGTTCGTTTGCGAGATCTGCACGCGTGACTTTAACGATCGAGCTTCCCTGTGGTTGCACATCCGCGCCACGCACAAAGAATACGCCGCATTCGCATGCGGAGTTTGCTTGAAAATCTGCCAAGACAACGCTCAATTACTGAACCACGTGAACATGTATCACGGCGGCTCGAAATTGCTGATATCCGAGCAGAGGAGGTACAGCTGCACGATATGCGGCCGACAGCATGACTCGCGAAAGAAGCTCATCACTCACGTGTCCATTCACAACATCGATCCGAGCTACGACCCGGCCAATTACGTCCAACTGAATACTAACTACTATAACGAGAGCGTCAATACCAACGATAGTAACAACGAGTTGATCATGGATTGCGACGACGAGAAACTCGACTGTTTCGTTTGCTTCAAGTCCTTCCCTAACGAGGATCAGCTCATTCGACATCAGCGAAATGCTCACAAACCCGAGCAAATACAGATGGGCGAATTCGGTGGTAATGGTACTCCTGGTGGATTGAATGACAGCACTAGTCGAGCGCAGTATCATCTGTTCTTTGTGTGTGAACTTTGTGGAAGCTCGCATCCTAGCAAATGGGAGAGGTGGCTTCATGTTAGCAGTATGCATGCCGACGAAATATCTATCAGGtgtgAACGTGACGATTGCGGTAAAATCTTCGCCACGAAAACTCTGCGAAACGAACACGTGCAGCATCATCAGCTACAAGGAAGTTCGCCCAACACCTGCGAGATTTGCGGCAAATTGTGGGGCAGTCGAGTTGACTATTGGAAACACGTGATGGGTGTGCACTCGGATACGGTGCCTCTTATCTGCGGTGTCTGTCTCAAAGTCTTCCCCGATGTGATTCAGCTCAGTCAGCATGTCAAAATGAAACATTGGCCGTTGACGAATGGTGACTTCAGTTGCGATATTTGCGGCAGGCCGTATTCGAATAAGAGTAAAATGTCGAGGCACAGGAAGATTCACGGTTTGGATGGCGAACCTTATGTTCCTTCTTCTAATAACACGAGTTTGGTTATTAACGATGCGTCCATGGGTGATATGTCTGGCATGCCAGAGCCAATTTCAATCGACAACGGTTTACCTCAACCCATCGACTCGAGCTCGACGATGGATCTCAGTTGCGAGATGTGCGGTGACTTGAAGTTCTCTTGTCTCGACGAGCTCTGCAACCATCGACGCGTGGCTCACAATCTCTTCCCTTGCGATTTGTGCAACAAATGTTACGGTCGTACGTCTCACCTCTGGAAGCACGTGAATCGTGTGCACAAAGGTCACGAGGACGTTACCTGTCGATATTGCCTCAAAACCAGTGCGTCGAGAGAACATCTGGCTGCACATATCGCCAAGATACACAGATACGAGCCCGAGGTGAAGCAAGAAATTCGCGAGACAATGAATTTCAAGCAAGAGATGGAGGAGGACGACGGTGTTATACATTTCTGCGAAAAGTGCAACAAATCGTTCAACAAAAGgTACCTGTTACGTCGTCACATGAAAGGCTGTCAAAACTACCGCAAAGATCCGGGTTCACTGTTGACGCGTTGCCGCGCGTGCGAGCGAATCTTCAAAGACCGCGCGAGTTTGCAGAAGCACATTGAGAATCATCACAGCTCGTACGAGTGTCACCTGTGCAAAATCACCATCACGTCGAAGCTCGGCATTATGACGCACAATCGCGTGCACCACATGCATCATCCCGATCTCACCTGCGAAATCGAAGGTTGTCGAAAATTGATGAGGACGATAGAAGACTTGGAATCGCACAAAAAGGACCACAAGCATCACCCGAGTCCCAACGTCTGTGATTTTTGCGGTGATACCGTGGAGAACAAGTTGAAGTTGAAAATGCACATACTGAGTTTGCACAGAAACGAGATTGGTGTGTCGTGCGGCGTTTGTTTGATTCCTATGAAAGATCCGAAGGATCTGAAGAAACACGTCGAGGAGGTTCACGAGAGTATTCTCTTGCGACCGAACACTTGTCAAGTTTGCGGCAAGCAGTACGCCTCGAAATGGAAGGCGTTCGATCACACGAAAAAGTGCCACGGTAAAGTGTTCCGCACGTGCAAGCAGTGCTTGGCGGTGTTCACGTCTGACGAAGATTTGCGCTATCACTACGAGCACATTCACAACATTCCCAAGGACCAACTCGACGCTTATCAGTACCGATTGGAAGTTCGCGGCAAGCAAGGTCGAATGGACGATTTCGATCTTGGAATTGGACCACTGGAAGTCGTGGTGAAGGAAGAACCCGACGAGCTGGAATTCGATATGGATGCGTTCGACGAAAACTCCAACGACTCCAAACGAAGACGCTCCGAGATGGACACTTACGACTGCGAAATCTGTCCGGAAATCTTCCTCAATCAAGAGTTACTCTCGTCGCACTACCGAAACGTTCACAACACCGATCCGTCGAGGATGTTCAAGAAAATCAAGACGGAAATGGGCTCGGGCAAGAATATGCGCGAACGCGAGAACTACGAGTGCAAGAATTGCCAGAAGCAATTCTGCACGAAAACGCTGTACATGAGTCACGTGAGCATGTGTACTCGCAAGGCTGGCTCGTCGATACTCGAGGCGCACTTGAAGAACAACAATCAGATTCAGATCAAGAGAGAAGAGCCGGAACCGGAGCTGTGCGAAACAAACTTAAATATTCCGGACTTCAATCTGTTCGAGGACATCAACATGCAGCTGTCGGGACAAAAACCAGTGCCGAGTCTGATGCCActcggaggaggaggtggtggtggtggcggcagTGGTCACACGTCGAAGGGTTCCAAGTACTCGAGGAAAGATTCGAGGAAAGTGTACGACGAGTCGACGAACACCGAGTGCACGTGCGAGGTGTGCGGCAAGCAGTGGCCAGCGAAGAAACATCTGTGGCAGCATTTGATTAGATTCCACAGAGCGGAGGCTGCCGTGACCTGCGGTGTGTGCTTGAAACTTTGCGCGACGTACGAGGATCTGGCGGATCATCTGAACGGCATACATCCGACGATACTCACGACGACGGGTAACAACTTCACTTGCAAGGTGTGCGGACGGTATCACAACGCGAGGagcaagctgctgctgcacatgAGCATCCACATCAATTGTAAAAGCAACTCGGTGTGTGCGAGGTGCAACAGGAGTTTCGAGAACGAGGACAAGCTGAAGGAGCACATTGCCACGTGTATGGGAGCGCGAGAAGGTCAAGCATCTGGCGAAGATCAAGTCGAGATAAAGATGGAATGCCACGAGATAAAAGAAGAGGAGGGTAGTTTGATCGGCGACGAAGACGACGCGCAATCCGACTCGGATAACAGCAGTTCCAACGATTCGGATAGTAGCAATTCCGATAGCGACAGTtcgagcgacgacgactcgagcaacagcAGTAAGGAAACCGAGAACAAAGAAGTTGGTCCGCAGGAGTCGATGAGTATGCCCGACGAGGACGAGATGTACGAGGAGTCGGAGAACGACGAGTACCTGAAGAAGAATCAACAGGAGATACAGCAGAGGTACGAGGCGCCGCAGAAAGAGCCGATGCTCGTCAATTATTTCGACGACGAGGGTCCGCCTGCACTGAGTCCCATGATGCCCATGGCGATTAAGGAACAGAACGAAGACGATAGTCAATTGAGCAGGAGTGCGTTGAGTACCGAGAAAGCTAAGAGCGATGCTAGCGAGGAGGATAGCAGCGACGAGGAAGAAGCCGAGGAAAGCGATGTCGAGGAGGTGGTGCAACACGCGCAGATTGTCGATCCGAATAGCGCGCTGCACGTTGACGATAACTCCGATGAAGATGAAGAGCAAGAGCAAGGCGAACAGCAGGAAATGGAAGAAGAACAGGAAGTAGAAGGCGAGCAAGAAgtggaggaggaagaagaagaagaagaagaagaagagggtgAGGAGGTCGAGCAAGAACACGAACACGAACAAGAACAAGAGCAAGAAATGGAGGAGCAAGAAGGTGAAGAGCAGGAAGGCGAAGAGCAAGAAGGCGAAGAGCAGGAAGGCGAAGAGCAGGAAGTTGAAGAGGACGAGGAAGGTTTAAATGGCACGGAAGTATTGGAAGTCGACGAGAATGACATGCAAAATCTTAACGGCACAGTACTGATGTTGGCAAACGATGCCGACGGCAATCAAATCCTCGTCGAGCGTAACATTGCTGACCTCGAGAACGACGATTCAGTCCACGATATGGCACAGTATGTCTTCCAAGACGGCGAAGGTTTTGCTCTCGAGGACTACGAGGCCATCGTCGAAGGCCAAGGTGACGAAGACGAAGACGGCGAGCATCAAACCTTCGAAATGGAAATTGGTCAAGCTCAAGAGGAGGAGGTCGAGGAAGAGGAGGACGAGTGA
Protein Sequence
MQSILDAIAEHDRLPKCLCYRCMYNLENFYDFRTACVNAVAMLERCLPPENTRPEIKQEEVEPYSELRMELLKDKETMPMLISEAPVVNPNAALGTPPRLRSDGEADAEDIHNHVASPHDEPLDDHDDHKSDEYEMDMETNPSDFLEMSALVPEDEGGLPQPQQQQRQQRRQQQQQQQQQQQKFQHRNEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSFKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGHCSRIYSTRTNLEEHIKSRHAGQPPPPEIQANYVQQDSRFQCKTCPKMYTNITDLNKHSRVCHASNSLNVHNSKLRNALDPSSDLSSVDSDYENKDYRSAEAKLAKNPQLTILKQALIKGESVKREYDERQKMLSKAKKQAKVETNDTNGKRWYCEVCPVNFGSVDELREHEKTHDADKPFICILCEKDFVLKSSLSRHILSSHGVDPTPLIESEKCLKKSVLEANANRPLIKQEANDSSSPMSDNLDDEEQENGYEIKPEMETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICQDNAQLLNHVNMYHGGSKLLISEQRRYSCTICGRQHDSRKKLITHVSIHNIDPSYDPANYVQLNTNYYNESVNTNDSNNELIMDCDDEKLDCFVCFKSFPNEDQLIRHQRNAHKPEQIQMGEFGGNGTPGGLNDSTSRAQYHLFFVCELCGSSHPSKWERWLHVSSMHADEISIRCERDDCGKIFATKTLRNEHVQHHQLQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVIQLSQHVKMKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEPYVPSSNNTSLVINDASMGDMSGMPEPISIDNGLPQPIDSSSTMDLSCEMCGDLKFSCLDELCNHRRVAHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCLKTSASREHLAAHIAKIHRYEPEVKQEIRETMNFKQEMEEDDGVIHFCEKCNKSFNKRYLLRRHMKGCQNYRKDPGSLLTRCRACERIFKDRASLQKHIENHHSSYECHLCKITITSKLGIMTHNRVHHMHHPDLTCEIEGCRKLMRTIEDLESHKKDHKHHPSPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEEVHESILLRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDLRYHYEHIHNIPKDQLDAYQYRLEVRGKQGRMDDFDLGIGPLEVVVKEEPDELEFDMDAFDENSNDSKRRRSEMDTYDCEICPEIFLNQELLSSHYRNVHNTDPSRMFKKIKTEMGSGKNMRERENYECKNCQKQFCTKTLYMSHVSMCTRKAGSSILEAHLKNNNQIQIKREEPEPELCETNLNIPDFNLFEDINMQLSGQKPVPSLMPLGGGGGGGGGSGHTSKGSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCATYEDLADHLNGIHPTILTTTGNNFTCKVCGRYHNARSKLLLHMSIHINCKSNSVCARCNRSFENEDKLKEHIATCMGAREGQASGEDQVEIKMECHEIKEEEGSLIGDEDDAQSDSDNSSSNDSDSSNSDSDSSSDDDSSNSSKETENKEVGPQESMSMPDEDEMYEESENDEYLKKNQQEIQQRYEAPQKEPMLVNYFDDEGPPALSPMMPMAIKEQNEDDSQLSRSALSTEKAKSDASEEDSSDEEEAEESDVEEVVQHAQIVDPNSALHVDDNSDEDEEQEQGEQQEMEEEQEVEGEQEVEEEEEEEEEEEGEEVEQEHEHEQEQEQEMEEQEGEEQEGEEQEGEEQEGEEQEVEEDEEGLNGTEVLEVDENDMQNLNGTVLMLANDADGNQILVERNIADLENDDSVHDMAQYVFQDGEGFALEDYEAIVEGQGDEDEDGEHQTFEMEIGQAQEEEVEEEEDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00326562;
90% Identity
-
80% Identity
-