Basic Information

Insect: Galeopsomyia nigrocyanea
Gene Symbol: -
Assembly: GCA_035047105.1
Location: JAWWMK010000021.1:8473470-8477213[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 1 1.6e+02 4.2 0.7 1 20 4 23 4 25 0.91

2 25 0.04 6.5 8.6 3.3 2 23 68 90 68 90 0.97

3 25 0.0033 0.54 12.0 2.2 2 23 122 144 122 144 0.96

4 25 1.8 2.9e+02 3.4 0.2 1 23 164 187 164 187 0.92

5 25 1.1 1.7e+02 4.1 0.9 1 23 207 230 207 230 0.93

6 25 3.3 5.4e+02 2.5 4.4 1 23 240 263 240 263 0.94

7 25 0.022 3.7 9.4 0.4 1 23 279 301 279 301 0.97

8 25 0.062 10 8.0 0.6 1 23 310 333 310 333 0.97

9 25 0.14 23 6.9 1.8 2 23 350 372 349 372 0.94

10 25 4e-05 0.0065 18.0 2.4 1 23 378 401 378 401 0.95

11 25 0.0028 0.46 12.2 1.5 2 23 407 429 406 429 0.93

12 25 0.012 2 10.2 0.5 1 23 434 457 434 457 0.96

13 25 3.5e-08 5.7e-06 27.6 0.9 3 23 465 485 463 485 0.97

14 25 2.1e-06 0.00034 22.0 0.3 1 23 491 513 491 513 0.97

15 25 2.9e-06 0.00047 21.6 0.4 1 23 519 541 519 541 0.98

16 25 0.0022 0.36 12.5 0.6 1 23 664 687 664 687 0.97

17 25 0.072 12 7.8 0.8 1 23 850 873 850 873 0.94

18 25 0.05 8.1 8.3 6.0 1 23 904 927 904 927 0.96

19 25 2.3 3.7e+02 3.0 4.1 1 23 953 976 953 976 0.96

20 25 0.00023 0.037 15.6 6.3 1 23 982 1005 982 1005 0.96

21 25 0.00063 0.1 14.2 2.2 2 23 1011 1033 1010 1033 0.95

22 25 0.043 7 8.5 0.2 1 23 1038 1061 1038 1061 0.97

23 25 9.5e-06 0.0015 20.0 1.4 1 23 1067 1089 1067 1089 0.98

24 25 6.1e-05 0.0099 17.4 0.4 3 23 1097 1117 1096 1117 0.97

25 25 9.3e-05 0.015 16.9 0.8 1 23 1123 1145 1123 1145 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	1	1.6e+02	4.2	0.7	1	20	4	23	4	25	0.91
2	25	0.04	6.5	8.6	3.3	2	23	68	90	68	90	0.97
3	25	0.0033	0.54	12.0	2.2	2	23	122	144	122	144	0.96
4	25	1.8	2.9e+02	3.4	0.2	1	23	164	187	164	187	0.92
5	25	1.1	1.7e+02	4.1	0.9	1	23	207	230	207	230	0.93
6	25	3.3	5.4e+02	2.5	4.4	1	23	240	263	240	263	0.94
7	25	0.022	3.7	9.4	0.4	1	23	279	301	279	301	0.97
8	25	0.062	10	8.0	0.6	1	23	310	333	310	333	0.97
9	25	0.14	23	6.9	1.8	2	23	350	372	349	372	0.94
10	25	4e-05	0.0065	18.0	2.4	1	23	378	401	378	401	0.95
11	25	0.0028	0.46	12.2	1.5	2	23	407	429	406	429	0.93
12	25	0.012	2	10.2	0.5	1	23	434	457	434	457	0.96
13	25	3.5e-08	5.7e-06	27.6	0.9	3	23	465	485	463	485	0.97
14	25	2.1e-06	0.00034	22.0	0.3	1	23	491	513	491	513	0.97
15	25	2.9e-06	0.00047	21.6	0.4	1	23	519	541	519	541	0.98
16	25	0.0022	0.36	12.5	0.6	1	23	664	687	664	687	0.97
17	25	0.072	12	7.8	0.8	1	23	850	873	850	873	0.94
18	25	0.05	8.1	8.3	6.0	1	23	904	927	904	927	0.96
19	25	2.3	3.7e+02	3.0	4.1	1	23	953	976	953	976	0.96
20	25	0.00023	0.037	15.6	6.3	1	23	982	1005	982	1005	0.96
21	25	0.00063	0.1	14.2	2.2	2	23	1011	1033	1010	1033	0.95
22	25	0.043	7	8.5	0.2	1	23	1038	1061	1038	1061	0.97
23	25	9.5e-06	0.0015	20.0	1.4	1	23	1067	1089	1067	1089	0.98
24	25	6.1e-05	0.0099	17.4	0.4	3	23	1097	1117	1096	1117	0.97
25	25	9.3e-05	0.015	16.9	0.8	1	23	1123	1145	1123	1145	0.97

Sequence Information

Coding Sequence: ATGCTCGTGTACGCGTGCAAGCAGTGCAACATTTACTTCCCCATTCGCCGGATGCTCGAGTTGCACGAGTGCAAGTTCAaaatcgacgacgacgacgacgaggagaatAGTTGGGAAGTGGAGACGCTCGATGAGAACCTGCtactgcagcagcaacagcctgTACCCACCGCGGTCAATCCGCGGAAAGAGAAAGGCCGACAGTGCCCGTTCTGTCCGTTCAGCTGCGACAATTATTCCACTTATCGTTCGCACGTAAAACGCAAGCACTGCCAACCGAGCGAGCCACAAGGGGGACGACGACAAACAGTGAAGCAGCAGCTGGCAACGTCTTCTCCCGCGGGCGACAAGGCCAAAATACGAAGTTGCCCGCATTGCCCTTTCGAGACGCGAACGAAATCCACGCTCTACTCCCACATCAGCAGAACGCACAAAGTGGGCACGAAGCTTCAGAAGCAGGGGCAGCGAACGAAAATCGGCGACACTGGTTACGCTTGCAACTACTGCACCTTCGCCGCGGCGACTATGTTGAGCTTGAAGTACCACACCGCTCGGGAGCACGGAGGGGGCGCGGAGGGATACGCCAAGCAGCCCGTGATCGAGTTTCCCGTGCGAGAGTTCGATTGCGAGCAGTGCGACTACAAGGCGAAGATCCGCAAGGCCATGCAGCATCACGTGAAAGCCGAGCACCAGATGAAGCCCAACGAGGAGGGAATGTTCTGCTGCCACATGTGCTCCTACGAAAGCTTCTCGAAGATGGGCGTGCAGCGGCACATCTCCATCAAGCACGACAAGCCGCGACGGCAGCTGCACCAATCGACCAAATTGGAAGCGTTCTCGTGCGAGACTTGCGACTACCGCACGTACAATGCCAAAGTTCTCGAGTGGCACGCCCAACGGCACCAGCTCGTCGGCGCCGTCGACGATTACTTTTGCGACGACTGCGACTTCGCCACGTGGACCAAGACTTTATTGCTCACGCACATCAAGCGCAATCACAGTCAATCGCCGGCGTCGTTGTTGCCCTTCGCCGGTAAAGGCCTGTTGGAGTGCGATCGCTGCGACTACACGACCAAGAATAAGCACGTGATGAAGGTACACGTGATACGCAAGCACACCGAAGACTTCAACCACACTTGCGAGATCTGCGGCAAGAAGTACAAAGTCAAGGCCGATCTCACCAACCACACGAGGTTCCAGCACCGCGAGCAACCGATCATGTGCGACGTCTGCGGCAAGCAGTGCCGCAACAGCAATCTGCTCTATCTGCACCAGAAGTTCGCGCACTACAAGCCCGAATTCGAGTGTCACATCTGCAAGAGGCGCATGGTGAGCGAGGCCAACCTCGCTGAGCACGTTCTCAAGCAGCACGAGCAAAAGCAAGAAGTCATCTGCGAGGAGTGCGGCAAGAGCTTCACCAGGCAGAGCAGGCTCAAGCTACACATGCGCACTCATCTCGGCTTGAGGCCCTACGCTTGTAAAATATGCGGCAAATCCTTCGGTCGAAGGAACGGCTTGAGGCAGCATTTGCTCATACACACCGGACAGAGGCCCTACGCCTGCGACATATGCGGCAAAGATTTTACACAGAAGACCGGTTTGATAAGCCATCGCAAGAGCCATCCCGGCTCGCATCCTCCTCTGCCAAGAATTACCATTGATCACGTGTTGTCATCATTACCAGTGGtggcgacgacggcggcggcggcggcggaatCGGCCAGCGTTAAATGTTGCGTGATCGACGAATCTGGCAAAGAGTACACTGCGATCGTGGCGGAAAGCGACATAATTCCCGCAGAGGAGGACGCAGCAGAGGATTTCGATGACTTCGAGGAAGTCTCGATCGACGGGAGCAGCTGTTACAATAAGCCGATGATCAACGCGATGGACGAGCAGCTaccgcaacagcagcagcagcaggatcCGCCTGCGCCGTTGCCGAGCAGCAATGATGACGTCGACGACTCGGCGATGACGAGTGTCATATTCATGTGTAAAACTTGTCAGATCTATTTCCCGGTGCGACGCATGCTCGAGACCCACATGTCGACCGTGCACGACAACACGACGACGAACAAGGTCAAGCTGGTGCAACGCTACGCTCGCGCGGGCTACCTCAGGCTCGATGACGGCAGCTACTCCTGTCGCTTCTGCGACTACAGGGCCCCCGGCCGCACCACCGTCAGTACCCACGTGGGCCGCAAGCACGGCCGTCGACGACCGCCGCTTGACCCGACAGAAGGAGCGCCGTcgccgaagaagaaaaagaaggcgGTGGCAAAGGTgaacagtagcagcagcagcaacaaagaCAACAACGATGTGGACCAGCAGCACGAGCAGGCGCAGGAGGATGAGCCCGACCGGCCGCCATCGCCGCTGGTCCACATCACCAAAGTGGTGTTGACCGTGGACAAGTTGGATGTCACAAGCCTCGAAgcggagcagcagcaggacCAGCCCGAGCTGCTGGAGGTGCCCGAGGCCACGAACGAGGAGGAGGTGGTGGAGGGCGAGGTCGGCCACGTGCGACGCATGTGCGAGTACAGCTGCCCGTACTGCAGGTACGAGACGCCCAAGCGAGGCGACATGCACGCGCACATCACGGAGAAGCACAACGAGGCGTGGTACGAGTTGGTGGCCCAGCAGGAGGCCGAGCGCGAGCAGCGCAAGCAGCTCGACACCTACCACCCCGAGGACGACCGGCACCACTGCCACTACTGCCCGTTCAGCGCCTCCTCGCGGCCCACCCTCAACGCCCACACGCGGCGCAAGCACAAGGGCTTCGTGCAGCCGcacgtcggcggcggcggcgcgcggcaGCGCAAGTCCCCCGGCGCCGCGCCCGTCGAGTTCCACTGCGACCAGTGCGACTTCAAGTCCCCCTACCGCCACAAGATCCAGGCGCACATCGAGCGCAAGCACGTGGCCGAGCCGCGCTACACCTGCGAGTACTGCAGCCGCAAGTACAAGACCAAGTGCGACCTCACCTCGCACATGCGCTTCCAGCACTTTCAGCAGGCCCTCGTCTGCGAGCTCTGCGGCAAGGtctgcagcaacagcaacgccCTGCACATACACAAGAAGCGCGAGCACTTCAAGCCGGAGTTCGAGTGCGGCGTCTGCAAGAGGCGCATGGTCAGCCAGGCCAATCTGGACGAGCACGTGCAGCGACAGCACACCGACAAGCAGCACTACATGTGCGAGCAGTGCGGCAAGGTGTTCGATCAGCCCTGCAAGCTCAAGCAGCACGCGATGACGCACACCGGCGAGCGGCCCAACATCTGTCACATCTGCGGCAAAGCCTTCGCCAGGCGGGCCGTGTTCAGGCAGCATTTGCTCATACACAGCGGCGAGCGGCCCTACGTCTGCGACATTTGTGGGAAAGCTTTCACGCAGAAGCCCGGCCTCATCTGCCATCGCAAGAGCCATCCGGGCGACAAGCCACCTTTGCCTGTCGTCTACATAGACTCCATTCTGGACAAATTTCTCAGCAAATGA
Protein Sequence: MLVYACKQCNIYFPIRRMLELHECKFKIDDDDDEENSWEVETLDENLLLQQQQPVPTAVNPRKEKGRQCPFCPFSCDNYSTYRSHVKRKHCQPSEPQGGRRQTVKQQLATSSPAGDKAKIRSCPHCPFETRTKSTLYSHISRTHKVGTKLQKQGQRTKIGDTGYACNYCTFAAATMLSLKYHTAREHGGGAEGYAKQPVIEFPVREFDCEQCDYKAKIRKAMQHHVKAEHQMKPNEEGMFCCHMCSYESFSKMGVQRHISIKHDKPRRQLHQSTKLEAFSCETCDYRTYNAKVLEWHAQRHQLVGAVDDYFCDDCDFATWTKTLLLTHIKRNHSQSPASLLPFAGKGLLECDRCDYTTKNKHVMKVHVIRKHTEDFNHTCEICGKKYKVKADLTNHTRFQHREQPIMCDVCGKQCRNSNLLYLHQKFAHYKPEFECHICKRRMVSEANLAEHVLKQHEQKQEVICEECGKSFTRQSRLKLHMRTHLGLRPYACKICGKSFGRRNGLRQHLLIHTGQRPYACDICGKDFTQKTGLISHRKSHPGSHPPLPRITIDHVLSSLPVVATTAAAAAESASVKCCVIDESGKEYTAIVAESDIIPAEEDAAEDFDDFEEVSIDGSSCYNKPMINAMDEQLPQQQQQQDPPAPLPSSNDDVDDSAMTSVIFMCKTCQIYFPVRRMLETHMSTVHDNTTTNKVKLVQRYARAGYLRLDDGSYSCRFCDYRAPGRTTVSTHVGRKHGRRRPPLDPTEGAPSPKKKKKAVAKVNSSSSSNKDNNDVDQQHEQAQEDEPDRPPSPLVHITKVVLTVDKLDVTSLEAEQQQDQPELLEVPEATNEEEVVEGEVGHVRRMCEYSCPYCRYETPKRGDMHAHITEKHNEAWYELVAQQEAEREQRKQLDTYHPEDDRHHCHYCPFSASSRPTLNAHTRRKHKGFVQPHVGGGGARQRKSPGAAPVEFHCDQCDFKSPYRHKIQAHIERKHVAEPRYTCEYCSRKYKTKCDLTSHMRFQHFQQALVCELCGKVCSNSNALHIHKKREHFKPEFECGVCKRRMVSQANLDEHVQRQHTDKQHYMCEQCGKVFDQPCKLKQHAMTHTGERPNICHICGKAFARRAVFRQHLLIHSGERPYVCDICGKAFTQKPGLICHRKSHPGDKPPLPVVYIDSILDKFLSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -