Basic Information

Insect: Galeopsomyia nigrocyanea
Gene Symbol: -
Assembly: GCA_035047105.1
Location: JAWWMK010032381.1:22900-27247[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0027 0.44 12.2 0.9 1 23 308 330 308 330 0.98

2 17 0.074 12 7.7 1.5 2 23 368 389 368 389 0.95

3 17 0.15 25 6.7 0.1 2 23 450 471 449 471 0.97

4 17 2e-05 0.0032 19.0 1.6 1 23 525 547 525 547 0.96

5 17 0.0033 0.54 12.0 0.8 1 21 557 577 557 581 0.92

6 17 0.024 3.9 9.3 0.2 1 23 662 684 662 684 0.97

7 17 5e-05 0.0081 17.7 3.9 1 23 728 750 728 750 0.97

8 17 0.00028 0.046 15.3 0.7 1 20 755 774 755 776 0.94

9 17 0.061 9.8 8.0 0.7 2 23 787 808 787 808 0.97

10 17 1.8e-05 0.0029 19.1 0.7 2 23 846 867 845 867 0.97

11 17 4.6e-05 0.0075 17.8 1.8 1 23 872 894 872 894 0.95

12 17 0.00058 0.094 14.4 1.6 1 23 900 922 900 922 0.98

13 17 4.6e-06 0.00076 21.0 0.4 1 23 938 960 938 960 0.95

14 17 3.8e-07 6.1e-05 24.4 0.6 1 23 966 988 966 988 0.99

15 17 4.1e-05 0.0067 18.0 0.2 1 23 994 1016 994 1016 0.97

16 17 8.1e-05 0.013 17.0 4.1 1 23 1022 1044 1022 1044 0.96

17 17 0.011 1.7 10.4 0.4 1 20 1050 1069 1050 1071 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0027	0.44	12.2	0.9	1	23	308	330	308	330	0.98
2	17	0.074	12	7.7	1.5	2	23	368	389	368	389	0.95
3	17	0.15	25	6.7	0.1	2	23	450	471	449	471	0.97
4	17	2e-05	0.0032	19.0	1.6	1	23	525	547	525	547	0.96
5	17	0.0033	0.54	12.0	0.8	1	21	557	577	557	581	0.92
6	17	0.024	3.9	9.3	0.2	1	23	662	684	662	684	0.97
7	17	5e-05	0.0081	17.7	3.9	1	23	728	750	728	750	0.97
8	17	0.00028	0.046	15.3	0.7	1	20	755	774	755	776	0.94
9	17	0.061	9.8	8.0	0.7	2	23	787	808	787	808	0.97
10	17	1.8e-05	0.0029	19.1	0.7	2	23	846	867	845	867	0.97
11	17	4.6e-05	0.0075	17.8	1.8	1	23	872	894	872	894	0.95
12	17	0.00058	0.094	14.4	1.6	1	23	900	922	900	922	0.98
13	17	4.6e-06	0.00076	21.0	0.4	1	23	938	960	938	960	0.95
14	17	3.8e-07	6.1e-05	24.4	0.6	1	23	966	988	966	988	0.99
15	17	4.1e-05	0.0067	18.0	0.2	1	23	994	1016	994	1016	0.97
16	17	8.1e-05	0.013	17.0	4.1	1	23	1022	1044	1022	1044	0.96
17	17	0.011	1.7	10.4	0.4	1	20	1050	1069	1050	1071	0.89

Sequence Information

Coding Sequence: ATGGACGCCGTGGCCGTCGAGGTGGTGAATTCGTCGGAGGAGCCGAAATCGGAGGACGAGGTAATGCCGGAACAAATAGATGTTTGCCGAATATGCCTCCTCGGCAATTCTTCGATGAGGGGCCTCTTCCACGATGACAGCAACATCATGCTCTCGCAAAAAGTCATGGCTCTCGCTAACGTTAAGATTATGCCTGGAGATGGATTACCCTCTCACATTTGTGCTGATTGTTCCGACAAGCTTGAATCAGCTTATAAGTTTAAGCTACAAGTCGAGCAAGCTGACTCAGTGCTGAGAGAGAAGGTGGACTCTTTACACATGAAAgaagaattcttttttaatcaagTGAACCTAGATCATCATAGAAACGATGTTGGTGAAAATAGTCAAGaaagtttgattttgaaagagCACATGGATCTATTGACTGAGAAAATTGATGAGGAGGTGCTGCAAACTGAAgatggtgaaaaaaaagaagatgcaATGATGGATGATCAAGTAGTAGAAACACACGAGTTGGATGTTGAGCAAGAGCAAGAAGTACCAAACGAACagaataatcaatttgaaacaGAAGAGCTGCAAGATTTGCAAGAGTTGCAGGATGATTTGAATCAAGTGCACCAGATGGCCCTTGATGAACACAATTATGTAGCAGATGTACAGCGGTGTGAGAATGTAGCACAGGAGCCAAAAAACAACATTGAAGAAATAAAGGAAGAAGAGGATTCATTGAATGAAAAACCAGAAGTTTTTGATACACCCAATGAGGCACAGCCAAACGAAGCAACGCGTCGTAGTCAGCGTAAAATAAATCAGAGAAAAGCTCGAGAAAACGATGAagtgaattattttgaaaacctAAATCTTAGTTCAAGATTGAAACAAGTTCATGCAGACAAGTCGGAAAAAGTTTACTTTATGTGTTTTGTATGCGACAGACAATTTTTATCCAAAGACGTTTTAAGAGAGCACATGCAGACGCACGAAGAACTGAGGAAAAGTTTTCCAATTGTCAAACGAACATCGGAAAAGGCGCCAATTGTTCCGACAAGCTCGTCCCCTTCAAAGTCATCAACAAGTGGAAAACAGCCAAACACTTGTCCTCATTGTGGCAAAGAGTATCTTTACGTCATATCATTCAAAAAGCACTTGCAACAGcatgaaaaagataaaggcGAGGTCAAGGATGAAGTGATGCCTTTGGAAGTGTCTTTCAGAGAAGATGATGATACGCTCGATTATCACGACGGGTACGAAGACAATCCAATGGATTAtgataattacgaaaaaataaaagaagaggaagatgCACAAATAAAGAACGATACGAATTGCTTATTGAAATGCAGTGTATGCGCGGAAGCTTTCGACGcggttgaaaaattgaaagatcaTCGAATGAAACACGTAGTTGAAGGTGTACTCAGCGAACAAGATCTTGAAACTGTCGCGGAAACTAACATATCTGATATTATAGAAAATCCAAAGGAACAAATCGTAAACAACAAACAAGATATCAAAGACGTAAAACCACAAATCAGAAAGTTCGTATCTAGTCTTGCGAAGTACGACTGTCAAGTCTGCCACGAATCCTTCAACAGAAAAGATCTTTTACGAAAACACGCTGAGATGCACGCGACcaatttgaaagttttgaaGAATTTCCAATGCACGCAGTGCAATAAGTTATTTAACAACGAGTTGACTCTTCGTAATCATCTTATTGCGACGAGCCACAAGACGATAATGCAAGGGCAAGAATACGATCCAAATAAGAGGATTAAAAGGTCAGCTGCCAAAGCAGCGCAGAAAATCATCGATCAGATCAAGAATTTAGACGAGTCCGAAGATGAGCCGGATAAAGTAGAGGATGATAGAGATTTTGAAGAGAGTATAGAGATATCGCCTGTAGTAGAAGACATTCAATTGaatttaCTACAACATGTAGCCAAGAAAACACAACGGAGTCCAAAGATTTACAGTTGTGCGACGTGCAACTTGAAGCTTCCTTCGAAGCAGGCCCTCGATAAGCACATGGAGTTGCACTCAAAAGATGAAAGTTCAAGTAAATCTGAAGCAACGAAGAAGGAAGAAGTACCAGCTAGAAAAGAatttgacgacgacgaagaagatgACGATGACTTTGAAGGTGGTCTTGATTGGCCTATGGACAGTCACGAATGTCCCACGTGCAAGAAAAAGTACAGCACGAAAAAGTCACTACTCCGCCATCAACTGTTGCACGAGGAGCCAAATTTCGAGTGCGATATCTGCAACGTCAAGTTTTACAGGAAAGACAAACTAAAAGCGCACTACGATAAGTGCGCTGAGAAAAATCCTGATCAAGTGCGAAAATGTAACATCTGCGGGGACACgtttgaaaacaatgaaattctCAAGGAGCATCGAACAAAACACGTAATAGAAGGTATCTTAACGGAAGAGGACTTACAGGAAATTGAGCCCAAAGCAGATGATAATGATTGCGAGAAGGCCCCAAGAAAGAGGCGGACGGATATCGTAGGGCTTGAGTGTCAAGAGTGCAATAAACGTTATACTTCCAGAAAAGGATTGCTGAGGCATATACAGgtacaCGAAGGCAAAAAATATCTGTGCGACATttgtccaaaaaaattttaccgtCGCGAGCATCTAAAGCTGCACGTAGCTAAGCACAACATGATCAAGCCATACAAGTGCCTCAGGTGCCCAAAACGTTTTATCAAAGAGGAGCAAATGAAGAATCACTTGCTGAAGCACGAGCGAGTAACGAAGAAGCCTAAAGAGTCCGACACACCAAAACGCTTCCTTTGTGAAATATGCTCCAAGAGTTTTACACAGTCGACGACCCTCATAGCTCATCTTCGAGCTCACAACGGCATTAAACCTTACGTTTGCGAGGTTTGCTCCAGGCCATTCACCACCAATGCTTATCTCAAAATGCACATGCGCACCCACACCCAGGAACGACCATACATCTGCCAGTATTGCTCGAGAGCTTTTGCAAGAGCAGATACGTTAGCCAATCATTTGACTTCTCACACTGGAGAGGCCAAGTATAGTTGTAAATACTGTCCAAAGCATTTTAGGAGACTAAAGTCGTTGAAAGAGCATGTGTTCATACACACCGGACAAAGGCCCTATGCTTGCCCTACCTGCGACAGGAGGTTCAATAACAACGGCAGCAGGTATGCCCACAGCAAGAGATGCAAACAAAATCTCGTCCAGGGCAGGCAGAACAATCAGATTTCCGTGCAGGATCTACGAGTGCAAGAGCAAGAGGAACAAGACGAGCAACAGCTGCAATTAGATGAAACGCAGGAGTTGAGGTTGCAACAGGCAACGATAAGTCAAGCTCAGATTATCAAACCACAGAACATTAAGACTATCACCTTCGCCAGACCTGGGGCGACTATCGAGCAGTCGCACGTACTGACTAATCAGGACGTTTATATGCCGCTTATTTTTGTAGGTAGCGAGGAGCTGATTGCTCTGTCTGAAGGCAACAAGATTTTCACGAGTTAG
Protein Sequence: MDAVAVEVVNSSEEPKSEDEVMPEQIDVCRICLLGNSSMRGLFHDDSNIMLSQKVMALANVKIMPGDGLPSHICADCSDKLESAYKFKLQVEQADSVLREKVDSLHMKEEFFFNQVNLDHHRNDVGENSQESLILKEHMDLLTEKIDEEVLQTEDGEKKEDAMMDDQVVETHELDVEQEQEVPNEQNNQFETEELQDLQELQDDLNQVHQMALDEHNYVADVQRCENVAQEPKNNIEEIKEEEDSLNEKPEVFDTPNEAQPNEATRRSQRKINQRKARENDEVNYFENLNLSSRLKQVHADKSEKVYFMCFVCDRQFLSKDVLREHMQTHEELRKSFPIVKRTSEKAPIVPTSSSPSKSSTSGKQPNTCPHCGKEYLYVISFKKHLQQHEKDKGEVKDEVMPLEVSFREDDDTLDYHDGYEDNPMDYDNYEKIKEEEDAQIKNDTNCLLKCSVCAEAFDAVEKLKDHRMKHVVEGVLSEQDLETVAETNISDIIENPKEQIVNNKQDIKDVKPQIRKFVSSLAKYDCQVCHESFNRKDLLRKHAEMHATNLKVLKNFQCTQCNKLFNNELTLRNHLIATSHKTIMQGQEYDPNKRIKRSAAKAAQKIIDQIKNLDESEDEPDKVEDDRDFEESIEISPVVEDIQLNLLQHVAKKTQRSPKIYSCATCNLKLPSKQALDKHMELHSKDESSSKSEATKKEEVPARKEFDDDEEDDDDFEGGLDWPMDSHECPTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCAEKNPDQVRKCNICGDTFENNEILKEHRTKHVIEGILTEEDLQEIEPKADDNDCEKAPRKRRTDIVGLECQECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKLHVAKHNMIKPYKCLRCPKRFIKEEQMKNHLLKHERVTKKPKESDTPKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYSCKYCPKHFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLVQGRQNNQISVQDLRVQEQEEQDEQQLQLDETQELRLQQATISQAQIIKPQNIKTITFARPGATIEQSHVLTNQDVYMPLIFVGSEELIALSEGNKIFTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -