Gnig004737.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- -
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010000021.1:8459691-8463692[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 1.6 2.6e+02 3.5 1.4 1 23 124 147 124 147 0.88 2 31 0.13 21 7.0 3.6 1 23 157 180 157 180 0.90 3 31 2.1 3.5e+02 3.1 3.9 1 23 185 207 185 207 0.96 4 31 0.00019 0.03 15.9 0.4 2 23 214 235 213 235 0.97 5 31 0.007 1.1 10.9 3.8 1 23 241 263 241 263 0.97 6 31 0.023 3.8 9.3 0.7 1 23 272 294 272 294 0.98 7 31 0.00053 0.086 14.5 0.0 3 23 301 321 299 321 0.97 8 31 1.5e-06 0.00024 22.5 0.7 1 23 327 349 327 349 0.99 9 31 0.00023 0.037 15.6 0.4 1 20 355 374 355 376 0.94 10 31 0.0024 0.39 12.4 0.0 1 20 456 475 456 476 0.95 11 31 0.00045 0.073 14.7 0.2 1 21 495 515 495 516 0.95 12 31 2.3e-05 0.0037 18.8 1.9 2 23 562 584 561 584 0.96 13 31 0.093 15 7.4 0.4 2 23 590 612 589 612 0.95 14 31 0.00028 0.045 15.4 4.1 3 23 620 640 619 640 0.95 15 31 0.00018 0.03 15.9 1.2 2 23 648 670 647 670 0.94 16 31 0.23 38 6.2 8.4 1 23 679 701 679 701 0.98 17 31 3 4.9e+02 2.7 0.1 3 14 709 720 708 728 0.84 18 31 2.8e-06 0.00045 21.7 0.6 2 23 735 756 735 756 0.97 19 31 0.0001 0.016 16.7 6.3 1 23 762 784 762 785 0.96 20 31 9.2e-05 0.015 16.9 0.1 3 23 847 868 845 868 0.95 21 31 0.0008 0.13 13.9 3.1 1 22 875 896 875 896 0.97 22 31 0.0015 0.25 13.0 0.3 3 23 905 926 904 926 0.97 23 31 0.0088 1.4 10.6 1.9 1 23 939 961 939 961 0.96 24 31 0.0023 0.37 12.5 3.1 2 23 998 1019 997 1019 0.95 25 31 0.0055 0.9 11.3 0.3 2 23 1024 1045 1023 1045 0.96 26 31 8.8e-05 0.014 16.9 0.4 2 23 1052 1073 1051 1073 0.96 27 31 1.5e-05 0.0024 19.4 2.9 1 23 1079 1101 1079 1101 0.98 28 31 0.62 1e+02 4.8 3.3 1 23 1110 1132 1110 1132 0.95 29 31 0.15 25 6.7 1.6 2 23 1139 1159 1138 1159 0.96 30 31 4.5e-07 7.3e-05 24.1 1.5 1 23 1165 1187 1165 1187 0.98 31 31 7.3e-07 0.00012 23.5 1.5 1 23 1193 1215 1193 1215 0.99
Sequence Information
- Coding Sequence
- ATGAGTGAAGTaaactattttattcaaaCGTATGACGCACTGATAGCTAAGAGTTGGCTTGATTATCTGTgcagaggcagcagcagcggcagtggCGAGGACGAAGATAAAGACCGATGGgccggcgacgacgacgattacGAGGTGGTGGACTCGGCTAAATCGGATAACGAAAACGAGAATGAGGAAGAGAAATACAAAGAGGAAGAGGGCGTCGAGAGCGACACGGAGCGAGAGGAGGACGAGATCCACGCAGCCGAGACGAAGGCGACGGACGAGAATCATCGTCGTCAACGGGAGCAGGACGACTTGGCCGCCGAGCCGATCGGCCACGTGCTGGTGCACCTGGACGGCGTGGTGAAGCGGCTCTATCAGTGCAACTACTGCGAGCAGCTGTACCCGTCGGTGAAGAGCTGCGTGAAGCACATGAGCGCGGACCACCCGACCGGTCGCAAGTACCGCGTGGCCTACCGGTGCAAGACCTGCCAGAAGCTGTTCAGGACGAAATACGGCTGCGAGAGTCACATCGCCGGCAAGCACAAGAACAAGCGCTACCAGTGCAAGTACTGCGAATTCCAGACCGCCTCGGTGACCTACATCAAGAAGCACGAGAAGCACCACGCCGACGCCTACGATATCCGCTGCGAGCTGTGCCACAAGGGCTTCCCCTCGCGGGCCCTCCTCGACCGCCACATCATCAGCCACACCGGCGAGAAGCCCTTCTGCTGCGAGACCTGCGGCTCGTGCTACGCCGACAAGCGCAGCCTCAGCCTGCACATGACCATACACAATCCCGAGGGTCGCCCCAAGAAGTACACCTGCGAGGTGTGCGGCTACTCGAGCTTCTGGAAGAACGCCGTCAAGACCCACATGAAGACCCACACCGGGGCCAAGGTCATCTGCGACGAGTGCGGCCAGGCGGTGGCAAGTAATTACTACCTTAAGATCCACAAGAGGATACACAGCGACGAGAAGCCCTTCACCTGTGACGTCTGCGCCAAGGGCTTCAGGCAGCAGAAGAATCTCGTGGTCCACCAGAGGACTCACACCAAAGTCAAGCCCTACAAGTGCGGCGCCTGCGAGAAGAGCTTCACGCAAAACGTCTGGCTCAAAAGACACAAGATAAAGCTCGAGCCGTCGATCCTGAAACGCAAGCGCTTCGCGCCAATTATTGAGCAGCCGCCGTCGATAATTCTCATGCAGGCCGTGGATGTGAAAAAACAAGAAGTCTCGGAAGAAGAAGTAGTCGACGTGTCGAGCAACAGTAGCAACGCCGATAATGAAATTGACAGCGCTGCACGTGCGGACGAATCGAATTTCGTGAAGGAAAATTTCGAAGAGTATGTCCTGGCGAACGAGGCGATGTACGAGTGCGACTCGTGCGACGAAGTATTCGGCGATCGCTCGTCCCTCATCATCCACAAAACCGAGCGGTCGATCGTTCGCACGAGAGCAGCTCTGAGGGACGGTATCGCGGCCAAATACCGCTGCGAGACGTGCCCGCGGGAGTTCTCGTCGAGAGGTGTACTGGAGAGGCATCGGCAAAATTGCGGTCCGATAGACCTGGAAGAGCTGCCGGAGAATCTTCGGcgacagcggcggcggcaggaGTCGACGAGAAAGAAGCCGAAAGTTGCGAAGGCAGCGACAAGCGGAACCGGCGGCGACGAAGAGGCGCCGGTCCAGTGTCACGAGTGCAACAAGGTCTTCAAGAAATACAAGTATTTGCGAGTGCACATAACGATGGCTCACTGCGCGCGTGGCATCGTCTGCCAGCTGTGCCACAGCCGGCTGGACACGGTGGCCCAGCTTCGGGAGCACATGCGCGAGGAGCACAGCGACGACTTCAGCGAGTTCTGCCACATCTGCGGCAAGAGTTTCCACCAGCGCCAGAGCCTCAAGGTCCATCTGACGGCTCACGCTCGCGACGACAAGCCACTCGTCTGCGAGATCTGCCGCAGGAGTTTCCGCCACGAGGTCTACCTGAAGAAGCACGTGCAGCAGGTGCACGTCGAGCTGAGGGGCCGCAAGAAGTACCAGTGCGAGCACTGCGGCTACGAGACCCACTACAAGGGCTGCTTCAGGGAGCACATGTACAAGCACACCGGCGAAGGTCAGGTGGCTTGCGACACTTGCGGAAAACACGTACGCCGAGCCTACATGCCCATACACTCGCGCATACACACGGGCGAGAAACCCGAGGTCTGCGAGTACTGCGGCAAGTCGTTCAGCGCCAGGAAATACCTGACCAAGCACTTGATCACGCACACCGGCGAGAAGCCCTATCAGTGCCGGATCTGCCACAAGAGGTACACTCAGAGGGGCACGCTCACGCTCCACGTGCGAAAGCATCATCCCGGAGAGATCACGGACACGAGGCCCTGGCGGCGCGAGCAGATAATTACGAAAGAGACGCAAGACGAAGTGACCGTCGAGGAGGAAGGAGCCTACGTCGAGATCGTCGAGGACGTGGTGGCGGAGGAGGAGCCGATGTTCGAGGAcagcagccgcagccgcaAAAGCAACATCAGCATCGACTGCCCCGAATGCGGCAAAGTACTGAAAAGCAAAGTCAGCCTGGCCACTCACCTTAAGTACGTGCACGAGCAGAGGAACCGCCCGTACAAGTGCAAGTACTGCGGCTTCAGGACCAAATATCGAGAAAGTTATCGGGATCACATGAGGCGCTACGAGATGAACACGACGGCGCACTGCGACCTGTGCGACGAGACTTTCGGCACGGAGATGGCCCTCGTCTGGCATCGCCGGACAGCTCACAAGCCGACGCTCGATCCGCGGAATCGGCAAGCCGTTTACGAGTGCGACCAGTGCAGTGAGCGCTTCTTCACGAAGTATCGCTTGTCGCAGCACAGGATCGACCACACGAGCAGTCCGCGCATCCGATGCGACAGCTGTCGCCGGCCGACCTTCTTTCTCAACAGACAGGCTTACGAGGAGCACCTCGAGGCCCGACATAATGCACCGCCCGTTGAGTGCGACCATTGCAAACGCAAGTACAAGACCAAGCACAGCCTGGTTCTTCACCTCGGCGTGCACGACAAGAAATTGATATGCGAGCTCTGCGGCGAGAAGTGCTCCTCCGCGCCGGTGCTGCGCGAGCACGTGCGCCGGCACAAAAAGGAATACAAGCTCACGTGCCGAGTCTGCGACAAAGGCTTCTACAATAAAATGTCACTCAATGCGCACCTCGTCACTCATACGGAGGAACGACCCTTCGTTTGTCAAATCTGCCGGAAATCCTACCGCTCGCTCTCTTACTTGCGCACCCACACGAAAACCCACGACGATCCGGGCAACCGAAAAAAGTACAACTGCCAACTGTGCTCTTTCGAGTCCTTTCACAAAAAGAGTCTGACGCTCCACCTGAGTGTGCACGCCGGTGACAACACCACCAGTTGTCACATATGCGCCAAGATCATCAGCAAGCAGTATCTCAAAACTCACTTGAGGATACACTCGGGCGACAGGCCGCACGTTTGCGAGTACTGCGGCAAGACATTCGCCATGAAAAAGAATCTGATGGTTCACGTGAGGACTCACACCGGAGAGAAGCCGTACAAGTGCGATCAGTGTGGTCGATATTTCGCCCAGAGCAATACTCTGAAAGTTCATATGAAGACTCACTAA
- Protein Sequence
- MSEVNYFIQTYDALIAKSWLDYLCRGSSSGSGEDEDKDRWAGDDDDYEVVDSAKSDNENENEEEKYKEEEGVESDTEREEDEIHAAETKATDENHRRQREQDDLAAEPIGHVLVHLDGVVKRLYQCNYCEQLYPSVKSCVKHMSADHPTGRKYRVAYRCKTCQKLFRTKYGCESHIAGKHKNKRYQCKYCEFQTASVTYIKKHEKHHADAYDIRCELCHKGFPSRALLDRHIISHTGEKPFCCETCGSCYADKRSLSLHMTIHNPEGRPKKYTCEVCGYSSFWKNAVKTHMKTHTGAKVICDECGQAVASNYYLKIHKRIHSDEKPFTCDVCAKGFRQQKNLVVHQRTHTKVKPYKCGACEKSFTQNVWLKRHKIKLEPSILKRKRFAPIIEQPPSIILMQAVDVKKQEVSEEEVVDVSSNSSNADNEIDSAARADESNFVKENFEEYVLANEAMYECDSCDEVFGDRSSLIIHKTERSIVRTRAALRDGIAAKYRCETCPREFSSRGVLERHRQNCGPIDLEELPENLRRQRRRQESTRKKPKVAKAATSGTGGDEEAPVQCHECNKVFKKYKYLRVHITMAHCARGIVCQLCHSRLDTVAQLREHMREEHSDDFSEFCHICGKSFHQRQSLKVHLTAHARDDKPLVCEICRRSFRHEVYLKKHVQQVHVELRGRKKYQCEHCGYETHYKGCFREHMYKHTGEGQVACDTCGKHVRRAYMPIHSRIHTGEKPEVCEYCGKSFSARKYLTKHLITHTGEKPYQCRICHKRYTQRGTLTLHVRKHHPGEITDTRPWRREQIITKETQDEVTVEEEGAYVEIVEDVVAEEEPMFEDSSRSRKSNISIDCPECGKVLKSKVSLATHLKYVHEQRNRPYKCKYCGFRTKYRESYRDHMRRYEMNTTAHCDLCDETFGTEMALVWHRRTAHKPTLDPRNRQAVYECDQCSERFFTKYRLSQHRIDHTSSPRIRCDSCRRPTFFLNRQAYEEHLEARHNAPPVECDHCKRKYKTKHSLVLHLGVHDKKLICELCGEKCSSAPVLREHVRRHKKEYKLTCRVCDKGFYNKMSLNAHLVTHTEERPFVCQICRKSYRSLSYLRTHTKTHDDPGNRKKYNCQLCSFESFHKKSLTLHLSVHAGDNTTSCHICAKIISKQYLKTHLRIHSGDRPHVCEYCGKTFAMKKNLMVHVRTHTGEKPYKCDQCGRYFAQSNTLKVHMKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -