Gnig018420.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- -
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010011168.1:291-890[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-09 1.1e-05 26.1 0.0 1 41 9 49 9 52 0.91 2 2 6.2 1.3e+04 -2.8 0.0 15 24 125 134 118 135 0.74
Sequence Information
- Coding Sequence
- ATGGCTCCAAAGCGGCAAATATGGACGCAAGAAAACTTGACATGCGCGCTGAAAGCAGTAGAATTTGGTAAAATGACAGCATATGCGGCAGCTATAACCTACAAAATACCTAAAACAACACTACACAGATATCTCACAAATAATGAGAgtgtaatacaaaaattagGCAAAAAATGTGCTTTGAGTGATGAAGATAAAGAAGAATTGAATTCTAGAATCAAAAGATTAGCTATAACTGGATATCTTAttactacaaaaattttaagattaatcgTATATAAGTTCTgcagagaaaataaattaaggcATCAATTTTCTGACGAGAAGCAAAGCGCTAGCCATAAGTGGGTACGAGATTACTTAGCAAAAAACAACTCCATATCAGCAAGAAGAGCTCAAAATTTAAATGCAGCTCGTGCTCAAAAGCTAAATAAAACAGTTGTGCAAATACACTTTGAAAGACTGAGGGAAGTCCTTGCAACTAATCAACTTAATGGAAAGCCTGCTACTATATGGAATGTGGATGAAAAAGGCTGCAGGCTAAATATACACAAAGCTCAACTTGTGCTGGCAGAAAAAGGAGCTAGATACACTTGGTAG
- Protein Sequence
- MAPKRQIWTQENLTCALKAVEFGKMTAYAAAITYKIPKTTLHRYLTNNESVIQKLGKKCALSDEDKEELNSRIKRLAITGYLITTKILRLIVYKFCRENKLRHQFSDEKQSASHKWVRDYLAKNNSISARRAQNLNAARAQKLNKTVVQIHFERLREVLATNQLNGKPATIWNVDEKGCRLNIHKAQLVLAEKGARYTW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -