Gnig012660.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- ttk
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010003769.1:8174-10302[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6 3.3e+03 -1.0 0.4 7 18 155 166 149 167 0.64 2 2 9.2e-10 1.9e-06 28.6 0.1 4 38 328 363 325 366 0.88
Sequence Information
- Coding Sequence
- ATGACGAACTCGGCGCAGCACTTCTGTTTGCGCTGGAACAATCACATGTCAAACTTCGTCTCGGCGGTGGCGCAGCTGCTGAAGAGCGAGGCCTTCACCGACGTGACCATCGCCGTCGACGAGGGCACCACCATCAAGTGCCACAAGATGGTCCTGGCCGCCTGCTCGTCCTACTTCCAGGAGCTCTTCATTAAGAATCCCTGCGAGCATCCAATCATCATACTCAGCGACGTCAAGTTCGCCGAGATCCAAGCCATACTCGACTACATGTACCGCGGCGAGGTGAACGTCGCTCAGGATCAGCTCACCGGCATGCTCAAGGTTGCTGCCTTTTTGAAGGTGAAAGGTTTGGTCGCCGACAGCGAGTTGAACGTGAAGCCAGATCTGCTGGAACCGGCGCAGTCGCCACTGTCCGAGCTTGCACACGTGTCCGCGGCAGCCTCGGCGTTGCAAGCGGCCGAAGCAGCCGTGCAAGCTGCCACCAACGGCGCTCTCAGCAACGGCTACACATCGCCGTTGCCCCACGTCGCCGCGCCGTTCAGCATGCCATTCTGCAAGTCGCCCAATCCCATGGCGCTGTGGCCAGCACTGGCTGGACTCCATCAGATGCCCCAGCATCCGATCTCGGGTCATCAGCCACCGCCGCGCAGCGCTTCCTCGTTCCTCGGCGGCTCCTACGAGAGCAGCAGCGACATCTCGCCGCTCAGTCGCAAGAAGATGTCCAGCTACATGGCCAATCGCGACACGCCGATTCTCAGGAACGTGCTCGGCGGTCAGAACGACAGTCCGCACCACGATCGTCAGGACACttacagcaacaacagcaacagctcGATTCACGATTCCGACAGAAGGAACAGTTCCGAACACTCGGAACCCATGGCCGAGGACGACGAGAAACCGCCGACCACTCCGCACAAGTACAACTCAAAAGgcgaGCAGAACAAAGACTGGAAGCGCTACAAGCAGTACACCCGGCAGAACATAATGGACGCGATGGCAGCGGTGAGCAACAAGGAGATGAGCGCCCTGCAAGCGGCAGCCAAATTTGGCATCCCATCGCGCACGCTCTACGACAAGCTGAAGAAAGCGGGCATCCTGCCGACCCGCGGTGCGGGCGTTCAACGAGCACCGCGCGAATCGCTGCACACGGGTAGCGCGCGTTTTCCCTACTCCAGCAGCCTGAACGGCAGTGTCTACGGTGGCGGTGCTGTTGTTTCCACAGCCAACGGCATgtccgagagcgagagcgagactGCCAGCGGGTACGCATCGGAAAGTCATcatcaagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagtagcaacgaCAAGCGCCACACCACCGGTGCCACCGCTCAACGGCTTGAGCTTGACGCCGAGCAGTCGCCCCGCGAGCGTCGACGAGATGGACCTGTCGGTGACGAGCAACAACAACGCCGGCACACCGAGCAGCAACGAGGACGGCGCGGAAGATCTGTCGGTGGGCAGTCGGCGATCCAGCGATCACAGCGTCATCGTGCCGCCCGGTATGCTCGGCGTCAAGGAGGAGGACGAGGCGAGCATGCACCACGACGAGTCGTAA
- Protein Sequence
- MTNSAQHFCLRWNNHMSNFVSAVAQLLKSEAFTDVTIAVDEGTTIKCHKMVLAACSSYFQELFIKNPCEHPIIILSDVKFAEIQAILDYMYRGEVNVAQDQLTGMLKVAAFLKVKGLVADSELNVKPDLLEPAQSPLSELAHVSAAASALQAAEAAVQAATNGALSNGYTSPLPHVAAPFSMPFCKSPNPMALWPALAGLHQMPQHPISGHQPPPRSASSFLGGSYESSSDISPLSRKKMSSYMANRDTPILRNVLGGQNDSPHHDRQDTYSNNSNSSIHDSDRRNSSEHSEPMAEDDEKPPTTPHKYNSKGEQNKDWKRYKQYTRQNIMDAMAAVSNKEMSALQAAAKFGIPSRTLYDKLKKAGILPTRGAGVQRAPRESLHTGSARFPYSSSLNGSVYGGGAVVSTANGMSESESETASGYASESHHQAAAAAAAAAAAAAAAAAAAVATTSATPPVPPLNGLSLTPSSRPASVDEMDLSVTSNNNAGTPSSNEDGAEDLSVGSRRSSDHSVIVPPGMLGVKEEDEASMHHDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00734760;
- 90% Identity
- iTF_00734760;
- 80% Identity
- iTF_00734760;