Gnig008117.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- lola
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010000040.1:13359692-13366874[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2e-08 4.1e-05 24.4 0.0 2 35 35 67 34 76 0.86 2 3 0.0078 16 6.5 0.0 4 28 252 275 250 285 0.92 3 3 8.2 1.7e+04 -3.2 0.1 30 38 321 329 321 331 0.87
Sequence Information
- Coding Sequence
- ATGATGAAGAGATCCACAGCAATGATGAACAATTCAATGCTTACTTTTTACTTCACTGAAATAAGTTTACCACGGCGCGGCAGACGCGCGATTCCAGTACCACCGGACACATTGAACGCAGCTTTAACAGCTTTGAATGGCGGTATGTCGTTGAGGaaggctgctgctacttttgGCATCACCAAGTCCAAGCTTCAACGTAAACCACGGAAAAAATTACGGAAAACTAAGGTGGCCGATAGTACTAAACATTCAGAAGAGCAAGAAAAGGGCGACATTCATGAAGTTCTTATCAAGGAAGagttcgacgacgacgtagagGATATAATAAATGAAGAGGTAGATATTTTTGAAGGCATTGGTCAACTAGGCGAAACTGAAAATCAAGATATCACTGTAATCAACGAAGGATCTGATGATGATCATGGGTTCGATGGCAGTTCAGTAATCGAAGAAACTGAATTAGTTCAAActcaacaaattttgaatgataaaaaagatcaaataatatatttaaggCCTATTCGTCGAGTTGAAGAGGTCaaagaagaattgaaaatagcTGAAAGAACTCCCGAAAAAATTCCCTACAAAGTCGTCATACCTAAAAAGCAACATAGCCTGGATACATTCGAAGGTTGGTGTATGCGCAATTTGACGGGCAAGAAACCTTCAACGCCGAAACCGAAAACACAACAAGCACCGACGAAGCAAACTAAAATCCGAGGAAGACCATCTTACCGCATGACTGCAAATTTACGAATGGCTTTGGAAGCAGTTGACGATGGTGTTACTTTCGAGAATGCCGCAACGGCTTTTggaattcttgaaaaaagacTGAAAACGATCAAGCAACTCGAAATCGATAATCCCTCGTGGATTTTGCATCGTAATTTCTACGAGCTAATTGCGCCGAGGACAACGTATCCATGCCAAAATTGCGGGAAGATTTACAACTACCACTCGAGTCTGTCGCGTCACGTCAAATACGAATGTGGGGTCGAACCTAAAATTCTCTGTCCTTTGTGCCCCTACAAGACTAAGCATCGCTCGAGTCTCATTACTCATCTTAATGGGCGTCATAAGCAACATTTCAAAACGGAAGATAATATTGACGTtgatttgaacaaaaataatatttACTATCCGAGAAAACGTCGTTCGAGGGGTCTTGGTATTTACGGCTGCGAGAATTGTCATCGTCGTTATTACGATCTGAAGAATCTCAAACGTCACATAAAGAATGAATGTGGTCGCAAACCGACCTACCAGTGCATGCATTGTCCCTACATGACTACGTTCAAGACTCATATTATCGCCCATGCAAATCAGTACCAGTTTACTTATCCATATCTTGTGAGCAATAACGTGTGCGAACAATGTGGCAGATCATACAAGCACAAACACCATTTGAAACGTCACCTGGAGTTCGAGTGTGGCGTTGAGCCTAAGTTTATGTGCATGTACTGTCCGCATAAAACCCGTTACCGAGACAGTCTTTTGAAACATATCGTCGCCAAACATGAGAAGGTTTTGTACCAATCTCAACCAACGCAATCTTTTATGGGCGAAATGAACGATTCGAAGAGCTGTTACAGTGGTTACGGAGAGGATTTCCTGTAG
- Protein Sequence
- MMKRSTAMMNNSMLTFYFTEISLPRRGRRAIPVPPDTLNAALTALNGGMSLRKAAATFGITKSKLQRKPRKKLRKTKVADSTKHSEEQEKGDIHEVLIKEEFDDDVEDIINEEVDIFEGIGQLGETENQDITVINEGSDDDHGFDGSSVIEETELVQTQQILNDKKDQIIYLRPIRRVEEVKEELKIAERTPEKIPYKVVIPKKQHSLDTFEGWCMRNLTGKKPSTPKPKTQQAPTKQTKIRGRPSYRMTANLRMALEAVDDGVTFENAATAFGILEKRLKTIKQLEIDNPSWILHRNFYELIAPRTTYPCQNCGKIYNYHSSLSRHVKYECGVEPKILCPLCPYKTKHRSSLITHLNGRHKQHFKTEDNIDVDLNKNNIYYPRKRRSRGLGIYGCENCHRRYYDLKNLKRHIKNECGRKPTYQCMHCPYMTTFKTHIIAHANQYQFTYPYLVSNNVCEQCGRSYKHKHHLKRHLEFECGVEPKFMCMYCPHKTRYRDSLLKHIVAKHEKVLYQSQPTQSFMGEMNDSKSCYSGYGEDFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00735025;
- 90% Identity
- iTF_00735025;
- 80% Identity
- iTF_00735025;