Gnig007504.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- -
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010000040.1:7791655-7793578[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-10 4.5e-07 30.6 0.0 1 39 15 54 15 60 0.92 2 2 0.57 1.2e+03 0.5 0.0 21 31 110 120 109 120 0.89
Sequence Information
- Coding Sequence
- atggttcggaattacattaaaaaaggATTAAGACAAACGTGGACAGAAGAGTCTATGAGGACAGCTCTTGAAGCTGTAATAAAGAAAGGTTACAGTATTAAGAGAGCATCTGTTGTTTATAAAGTTCCTCATGCAACACTCTCTAGGAAAGTTAATCAGTGTCGTCTTGATCCTGAAAGGCAAAATGAGCTGCTAGCTAATCCCAAATCAAATAGCCTTCAAACAGTATTTAATAAAGAGCAAGAGAATACTTTATGTGAGTACATTAGTGAACTGGAAAATGCCATGGTTGGATTGGTAGGCACAGATGTTAGACGCTTGGCTTTCCAACTTGCAGAGAAGTTCAATATTCCTCACCGATTTAAGAAAGATAGTGGATTAGCTGGTGAAGATTGGTACAGaggatttgtaaaaagaaacccttgtgtaaaaataaaaaggggtGAAGCACTCTATGAAAAGAGTAAAGTGTTCAGTAAAGAGAAAGTGTACACATTTTTTGACTCTTTAGAAAATCTCATAGACACATATGACTTAAAACCTAGTGATTTATATAGTCTTGATGAAACTGTTATAAAATGCTCGTCTAAATCTGTACAAGATTCTGAAAAAAGTGTCAAGTCTGCGGAAAATCAGTACAATTTAGTTACAGCTGTGATTTCCTTTTCAGCCAGCGGAGCTTATGTACCACTGTTGATGGTATTTCCTgacaaagtgaaaaataaacctCTGCTTCATGGTGCACCCGATGCAGCATGGGCACTTGTTAATTCCAGTGGGCAAATGCAGTTAGAAATTTTCATCAGATGGCTGCGCAAATTCATAGATGTGAAAAAACCCACAAGATCTAGACCTGCGCTCATACTTGTTGATGGATATCATTCTTATCTAAAGGACTTGGAAGTAGTTGAAATCATGACAGAAAATGGAGTTCATATGTTGTGTTTACCTCCTTATTGTAACCACAAATTACAACCttcaaaattcagttttatgGACATTCTCAGTACCACTTATAAAGAAGAAGTTACAAACTCAAAAATTACCTCTTCAGGGCAACCTGTTTCAGTTGATGAGGTGTTTCAGCTTTTTGGAGATGCCTTCAAGAAAGTTTCAACAATATCTGCAGCTGAAAGCTGTTTTGCAAATACTGGAATTTGGCCTTGTAACAGAGATTTATTCAAGCATGAGTTTATTTCAGTTACTCTAAATGTATCCTCAACGGTGAATGATTCACATTCTACGTCTGAGTCATCAGTATCTGTTGCTGATGAAGAATCTCAAATAATTCAAAGTGATGCATCCATTCCCAATGACCTGGCTACTGATGATTTGCATGAACCAATGATTGTTATTTCACAAAATAACATTCAGTCATATGAACTTCAAGAAACAAACCAAATAGATCAATCTTATGAACATTCTTTGCATCAGGgacattttttacaaattgaaAATGAATCATTGGAAAATGTAACACTTCCAAATGATAGCCAAACAACTGAAAGTTCTATTGTAATACCTCCAGAAGCTCATCTTACTGAAGTTCAACTAGAAGACTTAGAATTTTTAGCACAACGCCAAAGTAAACtctatttttatgtttctccCTACAAGTTGAAATTGTCGTAG
- Protein Sequence
- MVRNYIKKGLRQTWTEESMRTALEAVIKKGYSIKRASVVYKVPHATLSRKVNQCRLDPERQNELLANPKSNSLQTVFNKEQENTLCEYISELENAMVGLVGTDVRRLAFQLAEKFNIPHRFKKDSGLAGEDWYRGFVKRNPCVKIKRGEALYEKSKVFSKEKVYTFFDSLENLIDTYDLKPSDLYSLDETVIKCSSKSVQDSEKSVKSAENQYNLVTAVISFSASGAYVPLLMVFPDKVKNKPLLHGAPDAAWALVNSSGQMQLEIFIRWLRKFIDVKKPTRSRPALILVDGYHSYLKDLEVVEIMTENGVHMLCLPPYCNHKLQPSKFSFMDILSTTYKEEVTNSKITSSGQPVSVDEVFQLFGDAFKKVSTISAAESCFANTGIWPCNRDLFKHEFISVTLNVSSTVNDSHSTSESSVSVADEESQIIQSDASIPNDLATDDLHEPMIVISQNNIQSYELQETNQIDQSYEHSLHQGHFLQIENESLENVTLPNDSQTTESSIVIPPEAHLTEVQLEDLEFLAQRQSKLYFYVSPYKLKLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -