Gnig000773.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- ttk
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010000001.1:6204596-6206600[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.2e-08 0.00017 22.4 0.0 4 37 209 242 206 250 0.86 2 4 2.4e-11 4.9e-08 33.7 0.0 2 42 257 296 256 299 0.91 3 4 0.0033 6.8 7.7 0.0 19 34 324 339 311 344 0.75 4 4 2.6e-12 5.3e-09 36.8 0.1 4 41 370 407 367 410 0.93
Sequence Information
- Coding Sequence
- ATGCCCAAAACCGAAATCAACTCCGCGGCggcgtcgacgtcgtcgttcTCCTTCTCATGGGAGGACTATCAGAGTCACTTCTCGACGGTGGTACGCCAACTCCTGGACGAAGAATGTATGATCGACATGAGCCTCTGTGCCGGCGGCGAGCGCATCCAGGCTCATCGCCTCGTATTGTGCGCCTGCAGCGAACTACTGGCGGACTTATGCAGCCAGGTTAGCGATGAGCATATCACAGTTATCCTGGACAACATTGATCCAAAAGACGTCAGATCAATTGTGGAGTTCATTTACAATGGAGAGGTGCGAACtccagttgaaaatatcaacaacTTCTTGGCTGCCGCACAAACTCTCAAGATACAAGGTTTGATGGAAATTGGTCCAGTGGAAAGCGAAGAGGTTGAGAACAACAATGCCGATGATTGTCAGGATATAGAATATTTTGATGAGTACAATcaagatgatgatgacgatgatgtaATGATGGAGTTAGAAAAAGTTACACCTGATAGCAATGAACTTGACGATGAAGTAAAAATAGAGTCGATGAAGGAAGATAACTCTGATCCAATGTCGAGAAAGCGTAGGAGGAGTGTTTGTAAAAAGGAATACACTGATGCAATGCTAACTAATGCAATAAATGATATTAAGGCTGGCACTTCACTATTGGAAGCTGCTGCCAAGTTTCGTATACCAAGATCAACACTGTATATGCGAGCAAAAATACTAGGCTTAACGTTGAACAATCATAAATGTGATTACACAGCTGATGACATGAAATCAGCAATAGATGCTGTTATTGCTGGTTCCAGTTTGCAGAATGCTGCCGATAGTTTTGGCATACCAAAGACAGTTTTGTGGAGGAGAATACAAAAAGAAGGTCACGTGTACAGGACAGAAACTAGGAGAAACTATGAtgcggaaaaaagagaagctgCTATCAAAGCATTGGAGAGAGGAGAAGCTTTGACAAAAGTTGCTCAAGAGTATCAGATTCCAAAAACAACATTATTCAGAGACAAAGTACGTTTGGTAGACGAAGGAAAATTACCTGTGTCAGACATGAAAAGACGCAAGAGCTATATAGAAGGTGAGAAACGAGTTGCACTGGAAAAAGCAGTAGCTGCATGCAAAAAAGGAACTATGTCTCAAGCGACAGCCTCGATGACTTATAATATTCCAAAAACTACCATTTGGAGACGGCTTCAAAGAGATATAGCTAAAGCAGAGAGtatggaagagaaaaaattaatgttcaaaaaaggacattatcaaataaaaaaggaaggtATCAGTAAACCTGAAGATTTACACGATCCAAACTTTGAAGTGTATTGTGATGATGATTCACAAATCGATCTTGCCTACATTGAGGATTCAGAAATGTCAAGTGAACCAGTGATCATTTTGGCAAGGGAACCAGcaaatgaaatgaatttagAGAACAATCGACTTGTAGTCGTCCAAgatGGGAGTGAAGACAATTTCATCGCGTGTGGACTGGAATTGGATGAAAATGCATCTTTCGACACTAAAAGTTAA
- Protein Sequence
- MPKTEINSAAASTSSFSFSWEDYQSHFSTVVRQLLDEECMIDMSLCAGGERIQAHRLVLCACSELLADLCSQVSDEHITVILDNIDPKDVRSIVEFIYNGEVRTPVENINNFLAAAQTLKIQGLMEIGPVESEEVENNNADDCQDIEYFDEYNQDDDDDDVMMELEKVTPDSNELDDEVKIESMKEDNSDPMSRKRRRSVCKKEYTDAMLTNAINDIKAGTSLLEAAAKFRIPRSTLYMRAKILGLTLNNHKCDYTADDMKSAIDAVIAGSSLQNAADSFGIPKTVLWRRIQKEGHVYRTETRRNYDAEKREAAIKALERGEALTKVAQEYQIPKTTLFRDKVRLVDEGKLPVSDMKRRKSYIEGEKRVALEKAVAACKKGTMSQATASMTYNIPKTTIWRRLQRDIAKAESMEEKKLMFKKGHYQIKKEGISKPEDLHDPNFEVYCDDDSQIDLAYIEDSEMSSEPVIILAREPANEMNLENNRLVVVQDGSEDNFIACGLELDENASFDTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00734845;
- 90% Identity
- iTF_00734845;
- 80% Identity
- iTF_00734845;