Gnig008100.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- bab2
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010000040.1:13264486-13285318[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.6e-12 5.4e-09 36.8 0.0 1 39 439 478 439 482 0.90 2 4 1.3e-11 2.6e-08 34.6 0.0 2 39 494 531 493 534 0.94 3 4 1.1e-18 2.3e-15 57.2 0.0 2 45 549 593 548 593 0.97 4 4 2e-18 4.2e-15 56.3 0.1 1 42 600 642 600 643 0.97
Sequence Information
- Coding Sequence
- ATGGCCGGGCAGCACTACTGCCTGCGCTGGAACAACTACCAGTCGAACATGACCTCGGTGTTCCATCAGCTCCTGCAAACCGAGGCATTCGTCGACGTTACCCTCGCTTGTAACGAAGCATCCCTCAAGGCACACAAGGTGGTACTGTCGGCGTGCAGCTCGTATTTCCAGAAACTGCTGCTATCGAATCCCTGCAAGCATCCGACCATAATAATGCCCCAAGACGTGTGCTTCAACGACCtcaaattcatcatcgagTTCGTTTACCGCGGCGAGATCGATGTCTCGCAGGCGGAACTTCAGTCGCTGCTTAAAACGGCCGaccaattgaaaatcaaaggTCTGTGCGAGGTGCCGGAATCGGGCGAGGGTGGCGGCGCGTCGGTGAGTTGTCTGAGCACACCACCACGCGACACGAGTAGTCCACTGCCAATATCCAGCTCGTcgaatcatcatcatcatcgccaTCGTCAACGTCTCAACTGTTACGCCGGTGCCGGCGGCACCGCTGGCGGCGGTAAACTCAAAGCCAGACATCATCATCCCAAATACAAGAAGCCCAAAGTACGATCATCGCCCGATCGACTCTACAACAATCATTATCAGCTTCATCATCGCAAGTACAAGGAGGAGGATTTCGTCGAGAGCTACGTGAAGGATTGCAACAAGGAGAATCGACGCGAGAGTTGGCCGTCCGAGGATGACGATTGCATGGAGACGACAGGAGGATCAGGCGTCGCGTCTCTAATCCTGGACACGAGCCAACAGCGTAACGGCagtaataataacaacaacaacaacaacgaatcACCAACAACTgaatcgacgacgacgaataaCAACGATCGAGAAAGCAACGCcaacgacgccgccgccgaaGTAGCTAGCAACAACAATAACGGTGACATGTTTTGTCACACAGGCCTTGGTCATTACGGACATCATCCGGACCCGACCGAGGTGGATTTGCCGCCCGAGACACAGCCCACACCGCCTAGCGCCACCCTCGTTGGCACCACCATCACCCACCTCAGAGACTCCGATCATCACGGTACAgACATTCAGAACTGCGACAGCGTGAAGATTAAATTCGAGACTTTGCACACGATGGATTCGTCGGATACGATCGATATCGACAGCCACATGTCGGACCGCGCGTCGGTCAGCTCGAAGACCGAGGACAACATGATGATGATCACACCGGAGCTCCTCGGCCTCATGCCCTCGGGTAGCTCGGTGCACTCGGATTCCGGCGAGAATAACTCGCGCGGCCATTCCGGCGGATCGGGACATCATCACGGCTCGAAATCTTGGACGCAAGAGGACATGGAAGCTGCGTTAGAAGCTCTCAGGAATCACGATATGAGTTTGACAAAGGCTTCAGCGACATTcggtatcccgtcgacgacACTCTGGCAGCGAGCCCATCGTCTGGGTATCGACACGCCGAAGAAAGACGGCCCGACGAAGTCGTGGAGCGACGAGAGTCTGAACAACGCGCTGGACGCTCTGAGAACGGGCACGATCTCAGCCAACAAAGCGTCCAAAGCCTTCGGCATACCGTCGAGCACGCTCTACAAGATAGCCAGGCGAGAAGGTATAAGACTGGCGGCGCCGTTCAACGCGAGTCCAACCACATGGTCACCGGCGGATCTCGATCGCGCCTTGGAAGCTATAAGGAACGGACAGACTTCCGTTCAGAGAGCTTCCACCGAATTTGGCATTCCTACGGGGACTCTGTACGGTAGATGCAAGAGGGAAGGCATCGAGCTTAGCAGGAGTAATCCAACGCCTTGGAGCGAGGATGCTATGACGGAGGCGCTCGAGGCTGTCAGGCTAGGACACATGAGTATAAACCAAGCAGCGATACATTATAATTTGCCCTACTCGTCGCTCTACGGCCGATTCAAGAGAGGCAAATACGAGGAACCCGTAGTGAACGAGATGTCGCAGGATGGCTCGTCGCAACACTTCCATCAGAGTCCAACGCAGACGAAtcactcgtcgtcgttgggCGAGCAGATGCCTTATCAGGGCAGCTGA
- Protein Sequence
- MAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESGEGGGASVSCLSTPPRDTSSPLPISSSSNHHHHRHRQRLNCYAGAGGTAGGGKLKARHHHPKYKKPKVRSSPDRLYNNHYQLHHRKYKEEDFVESYVKDCNKENRRESWPSEDDDCMETTGGSGVASLILDTSQQRNGSNNNNNNNNESPTTESTTTNNNDRESNANDAAAEVASNNNNGDMFCHTGLGHYGHHPDPTEVDLPPETQPTPPSATLVGTTITHLRDSDHHGTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKTEDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGGSGHHHGSKSWTQEDMEAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRNGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSPTQTNHSSSLGEQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00326489;
- 90% Identity
- iTF_00734787;
- 80% Identity
- iTF_00734787;