Fvar001325.1
Basic Information
- Insect
- Frieseomelitta varia
- Gene Symbol
- -
- Assembly
- GCA_011392965.1
- Location
- WNWW01000676.1:111390-121285[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00047 0.029 14.1 1.4 1 23 746 768 746 768 0.97 2 11 0.0024 0.15 11.8 0.0 2 23 858 879 858 879 0.95 3 11 8 5e+02 0.7 2.5 3 21 1028 1046 1027 1047 0.95 4 11 0.012 0.75 9.6 0.1 3 23 1068 1088 1066 1088 0.95 5 11 0.0028 0.18 11.6 0.6 1 19 1172 1190 1172 1190 0.97 6 11 2.2 1.4e+02 2.5 0.1 1 23 1261 1283 1261 1283 0.96 7 11 4.8 3e+02 1.4 0.8 1 12 1290 1301 1290 1313 0.67 8 11 0.026 1.6 8.5 0.1 2 23 1332 1353 1331 1353 0.96 9 11 0.1 6.5 6.7 3.0 1 23 1605 1627 1605 1627 0.96 10 11 0.00063 0.039 13.6 0.3 1 23 1958 1981 1958 1981 0.97 11 11 0.2 12 5.8 0.9 1 23 1983 2005 1983 2005 0.96
Sequence Information
- Coding Sequence
- atggaaatatttggtGATTCTTCAGTTAATAATTActcattaaaaacaattaatatgaCACCACCGTTGGAAGAACCAAAGCCTAAAAATCCtaaagcgaaaaagaaaagaaaagtgattttttcttttgcacgaAGAAGAAGGtctaaaaacaaattgaagaagttgtcaaaaaaacaaaatacattgGAGACTTTGTATAAATTCTGTAAGCCAGTTGTTGTAAGTGTTAAAAGATTATCAGTATCAGAGATAAAACAATGGTGTGAAAAAGACTCATCTCCCTGTCAAGTAGAAAATGTATCAACacaattgaaaaaatcaaaatcaaagaataatgtacaaaaaagtaaaaaattcaccagaaaaaagataaataacgaaagtcatttaaattcaaaaaatgaaatgaaatctccaaatacattattttctcaagaaacagatattagaaataagaaattacttatagaagatttattaagaaatgttAAACAACCATAcatgaaattacaaagaatAGACAaagtgattaataaaatagcaCAATCATTTGCAAAAACAACTACAGTTACAGAATGTGAAGCAAGTATCCAAACAGAATGTAAAACAAATGTCCaaacagaagaaataaaagaaactataAACAGAAgcataaaagaaattgaaactcaAGCTGAATTAAATGTATCTGTACCAGAGGTGCAAAAATTACCActagtaaatattaacaaagatGAGTATCCACAAAATCCTGAAATTGAGAAGGTGGCAGTTAGCTTTCATACAAATGAAACTTTACAATTGAATGAATGCACAgactcaaattttatttctaattctgatactgaaattgttaaaaatactcataagaaatgtttcaaaaggAAATGTGAAGTCATATGTGATTCTAACACAGATAATAGTAATGATAATGCAAATAGttcagaaataattttgaatgaagtgaagaaattaagaatgaatttaccaggaaaaataaacaaaatgaatataGTAAATGAAAAACACAATATTATTGAGGCAAAATTATCCCCAAAGTTACTTATTTGTGGTGAATCATACAAAGAGAGTTTAATCGCACAAAAAAATGTTGATGCTCCACTACAAAAGctagatatattaaaaagattagCTAGCCTATGTGATCCTGAAGATGATGAATATAATAACGACAATGATGAttctgataatataaataaaaatgctgAAAAAGATAATACTTCCAGTTCTATACCTTccacattaaattttaaatctgttGCAGAAGATAGTGCTTCTATGAAAGTACGCAATGATGACAGTATACCAATAGAGAAATCAATTCTAGAAAACAAAGAGATTCAAGAATCAATGCAAGAATTATTTTGTTCCGATAAAAACTTCttacaaagatataaaatatttaaagaattaaaagtcttcttaataaaattggatACTTTGAAAGATTTTCATACTAAACATTCAGCTACAGAAATCGAAAAAATAACTAACAAATTTATGaattcttttgtaaatttgaattcatcaaaaattcaacATAATAACCAAAGATctatagataaaatatcttttactttggatatttcaaaagattCTAATGTTAACTTCGAAAAATCCATAGTTTGTACAATTCCTAAGAAAATGCAAATCATATCTAAGTTACCTAAGAATTCTTCAGAAAAATcctcttcaaatttaattagaaatatgaagagaaaggaaaggttaaaaattggaaaagcttctcataatttaagaaaaatttttgatgataAGTCTAAAAACAGACAACATGTTATTAGTAATTTGAACAAGAATTCAAATGTTCCAACTCCTACTATTAAATCTTCTTTACAAGAGTCCAGCAATAAAACTTTTGAATTATCAAATATGatagaaaatgttaatataaacaaatctattaataaaatgtcttCCTTAAAGAAACAGATGCCAGAAATTTCTTCAACTGAAAATTCTGTGAAGTCAGTTACTGATGCAAGATTTCCAGAAAAAGCAGAAATTAATACACCTCAGATTACTAATTTCAAAtcacatttttcaaatcaaagTGAAAAACTTGAGCAAACGACATTTGTATCCAAAACACATAAAAAATCTACAAATGTTACAGCTACAAATATAAGTGCTTCAACTTGTTATTCTTCCACAATGTCTCTTAAAAAACCTAAAGATAAGAAAGATACTTATAAATGTATTGTTTGCGATTTTTGTTTTGAAGATTATTCTAATTTACaacaacatttaattatacatacacaaaaacaaaatgataGTTCATTAAACACGTCCAACTCATTAGCTGAAAAATCTGAAGAAACAATATCTCAATCTTCAGAAGCAGAGGATCCAGAATTGTCACAAATGTCTGAACACAAGAACGTTGAACAGGCGTCATTAcaatgtgaaaataataagcaacaaaaggaaagaaatactGTACCAAGAGacttgttaaataaaaaaaagagaaaaaataagattaaattaaagaataagaGTCAATGTACAAGTCATTCAAATGAATGTAgtatttgttcaaaaatttttccaacagtGACTGATTTGGCAGCTCATATCTTTTTACATACAGAGAAAGAATTACAACAAGCATATAAACTTGCGAAACAAAAATTGGTGGAAAGTGAAAatacagaaagagaaaaatgtaaacaaacTAGAGCTGAACAAACTGaacaaattgaagaaactAGAATTGAACAAAATCTTGAAAGTGTAAATAGGACTGTAGATAGTGCAATTGAAGGAATTCACGAAATTAGTGATAAGGAAGAATCATTCCTCGCACAAAaatcaaatgaattaattacaaaagatCCAGAAATTAGAGATACAGAATCTACTGCCTTGAAAAAACACGATtcacaaagtataaaattagatCTATTGTCAAAATCGAGtaaagacaaaataaataaaatagaaagtaataaaagagCATTCACAGTATGCAAATGTCATAATAAATCGGgaactaataaaaatactttacaaATTGAGATAGTTCTTCTTTGTCACACTTGCAAAGTATTATTTAGAAGTATAGAATGTTTCGAAACTCATTATCGTCTTCCTGAATATACAAACTGTAATCAGAATCGTTTAACTAGTAGTCGTTCTCCAAATTTATTCTGCGCCAATTGTGGTATGATATTTAGTTCGGTTCAAAATGTACGTCAACATTTAGAAGTACATGTTCGTTTTAAACAGAACTGTATAATGGATTTTCGATGTAACATTTGCAAAGTCATATTCCTTGGAATAGGAACtcttttttacattcattGGTCGAAGCATTCAAGAAATCCTTTCTGGATGGCTAGTGAACAATCGTTTCCAAAACATTCCATAATAAACtcaaaactaaagaaaatagATAATCTTTCTACACAGAATGCAATGACTTTGAATAGCTCTGTGGACCAATATATACAAGTTGCAGAACACGTGTgtaataattgcaaattaccTTTTGTTACTCAAGATGATTTAAAGAATCATGATCCAAGATGTAAAGAGTTTAAGACATTTCAAGATACATCTGTTGTAGAGAACTCTAATTCACATGTAACAATAAGGATAAATTGTAGTTTATGCAATGATAcctttattgataaaaaaagagaattttataatcatataaaaaataaacataattgtaATGTAGATCCTCAGTTTGTATGTCTATCATTCCCACTTGCTAAAGTGGTATACATTTGCAATGTTTGCATGGCAATGACTGAAAATTTAGACGCTTTTGAAAATCATTGGTTGAAACACAATACAACTCATATAAACTTTACTTGTAcacattgtaataatatatattataacaatttaaactcTTTCATAGATCATGCTGAAGAACATAAAAGTGATACTAATGTAGTATCTTGTAcagtaaattatacaaaagcAAAATTGGTCTgtgaattttgtaatactGGTTTCGAGTCTTCTCAAGATATGTATGAACATATTGTTACTCATAACACAAGTAATCAACAAACGTACTCTAAGATTGATCAAATTACAAATCAGGATAGCCCTGCATCAGCATCACAGACAAATTGCACTTCCAGTTCTGTAAAGAACATTGGAAAAGAGATAGAGAAATCTTTAGCAATGGAAGCTCAAgtaatggaaaaaattaatgaaatttctccaTTAGGATTTAATATAGACAAAGATAAAGAGAAACTAATCAGAGTATTAGAAGGAAGTGAAGATGATTCTGAAAATGAATTGATAATAGACTTGCCAAATCAGTCAGAAGAATCTAATGAAATATCAACAGGAGAAGAAAATAGGGAAAAGCAAACTACATCTAATCTTATTTCAGATAAATCTTCTATCAACCAAACTTGTGAAATgtcagaaaataatataactaagaCATTAAGAACGAATACAAATGTCCAAGTGTCTTCACAAAATATTCCACTTTCAGAACCTAATGAAAATGTTACAGATTCTGTTTTTACTGCCAAAAACATAAATCctcaaatttctttacaaacaTCCAATTCAAGCGCTAAATCCACAAGTGTTTTGCAAAATTCAGTTACGAAAgacgtaaaaattatagaaaataatgaaagttgtgaCACTAgctgtgaaattttaactggaaaggaagaagaattaACAACTTTAACAAAACAGTCACCGAAGAAACAAAGTTCACCAAGACCAAAAGGATATTTAAGAGTGAAAACTCTTGCAGAACTTACAGGCTCTGCacatttctgtaaaatttgtaattgtgCTATTGAAAATGCTAATGAATTAGCTAAACATTTTAAGACTCACAATACTTCAAACAAAGATAATAACGATCACgaaattagagaaaaagaattaacttCAAAACCATTAGAAACAAATAAGTTTGGTCTTTATCCTTTATCAGTCCTTAAAAAAACACTTACAAAATCTAATACTATAGTAACAAACAGTCAAAAACCACagcaattacaaataaatacaaaacagGACAGACATTTACCTTCTTTGCAAAACGTAACATCAgcatatcataaaaatttaccactttgtaatttcgttcgaacgacAACAGTTATGTCACGTTCGGCTACTTCGAAATCTGATGGTATACCAATCAAAGTAACAGcaaatacttcaaatatacCGAACAGTCATACTAACATGCCGTATGAACAAAGAACACGTGTAACGTCGTCTATCAATGGAAATAAACAAAACCCTGCTGTTATGACAAATTCAAGTAACCTTTCATTTTGTCAGAAgcaaaatttggaatattgGATCCAGaggaaaaaattagaaaaaattgataacaGACCAATAAAATCCAAGATGGATCAAAATTCTGAACTATATCAACAAACAATTCAGACAAGGATTGAACGTGCTCCTTCATCTGCCTGTTCtcaatattcttcttttactGCAGGCACTTCAAATAACAGTAATCAAATGCCCAAACAAAATCAAGCGAAAATAGTTAATCAACCAGAAAATACTTcctctatttattataaaagtccAAGACTTGCTAATGGTGGAATGTCAATAGTGATTAATCAGACTGCACCTATACAGAATATACCCACAATAGGAATCCTACAGCAGCCAGCACAGCAACAATTATATCAGCATCAAGTTTACAGTGAACCAGTGAGAGTTATGAATGCAGAATATGTGCAACAATCACAGaATTTGGTTAACTGTTCTGAATCAAATGGTGTTTATCAACTGATAAATAATCAGTATGAACTATCAAATAGACAACCAAATGTTACAGCTTATACAGTTAGATATGTATGTCCTTATtgtgtgaaaaattatacttctGAGGACTTCAtgcaaatacatataaataaggatcataattttgtatgtaatatttgtaatttgcgTTTATACAATTTCAACGATTTATATCTCCACAAACTTAATCATAATGTAAATTCAGTGTAA
- Protein Sequence
- MEIFGDSSVNNYSLKTINMTPPLEEPKPKNPKAKKKRKVIFSFARRRRSKNKLKKLSKKQNTLETLYKFCKPVVVSVKRLSVSEIKQWCEKDSSPCQVENVSTQLKKSKSKNNVQKSKKFTRKKINNESHLNSKNEMKSPNTLFSQETDIRNKKLLIEDLLRNVKQPYMKLQRIDKVINKIAQSFAKTTTVTECEASIQTECKTNVQTEEIKETINRSIKEIETQAELNVSVPEVQKLPLVNINKDEYPQNPEIEKVAVSFHTNETLQLNECTDSNFISNSDTEIVKNTHKKCFKRKCEVICDSNTDNSNDNANSSEIILNEVKKLRMNLPGKINKMNIVNEKHNIIEAKLSPKLLICGESYKESLIAQKNVDAPLQKLDILKRLASLCDPEDDEYNNDNDDSDNINKNAEKDNTSSSIPSTLNFKSVAEDSASMKVRNDDSIPIEKSILENKEIQESMQELFCSDKNFLQRYKIFKELKVFLIKLDTLKDFHTKHSATEIEKITNKFMNSFVNLNSSKIQHNNQRSIDKISFTLDISKDSNVNFEKSIVCTIPKKMQIISKLPKNSSEKSSSNLIRNMKRKERLKIGKASHNLRKIFDDKSKNRQHVISNLNKNSNVPTPTIKSSLQESSNKTFELSNMIENVNINKSINKMSSLKKQMPEISSTENSVKSVTDARFPEKAEINTPQITNFKSHFSNQSEKLEQTTFVSKTHKKSTNVTATNISASTCYSSTMSLKKPKDKKDTYKCIVCDFCFEDYSNLQQHLIIHTQKQNDSSLNTSNSLAEKSEETISQSSEAEDPELSQMSEHKNVEQASLQCENNKQQKERNTVPRDLLNKKKRKNKIKLKNKSQCTSHSNECSICSKIFPTVTDLAAHIFLHTEKELQQAYKLAKQKLVESENTEREKCKQTRAEQTEQIEETRIEQNLESVNRTVDSAIEGIHEISDKEESFLAQKSNELITKDPEIRDTESTALKKHDSQSIKLDLLSKSSKDKINKIESNKRAFTVCKCHNKSGTNKNTLQIEIVLLCHTCKVLFRSIECFETHYRLPEYTNCNQNRLTSSRSPNLFCANCGMIFSSVQNVRQHLEVHVRFKQNCIMDFRCNICKVIFLGIGTLFYIHWSKHSRNPFWMASEQSFPKHSIINSKLKKIDNLSTQNAMTLNSSVDQYIQVAEHVCNNCKLPFVTQDDLKNHDPRCKEFKTFQDTSVVENSNSHVTIRINCSLCNDTFIDKKREFYNHIKNKHNCNVDPQFVCLSFPLAKVVYICNVCMAMTENLDAFENHWLKHNTTHINFTCTHCNNIYYNNLNSFIDHAEEHKSDTNVVSCTVNYTKAKLVCEFCNTGFESSQDMYEHIVTHNTSNQQTYSKIDQITNQDSPASASQTNCTSSSVKNIGKEIEKSLAMEAQVMEKINEISPLGFNIDKDKEKLIRVLEGSEDDSENELIIDLPNQSEESNEISTGEENREKQTTSNLISDKSSINQTCEMSENNITKTLRTNTNVQVSSQNIPLSEPNENVTDSVFTAKNINPQISLQTSNSSAKSTSVLQNSVTKDVKIIENNESCDTSCEILTGKEEELTTLTKQSPKKQSSPRPKGYLRVKTLAELTGSAHFCKICNCAIENANELAKHFKTHNTSNKDNNDHEIREKELTSKPLETNKFGLYPLSVLKKTLTKSNTIVTNSQKPQQLQINTKQDRHLPSLQNVTSAYHKNLPLCNFVRTTTVMSRSATSKSDGIPIKVTANTSNIPNSHTNMPYEQRTRVTSSINGNKQNPAVMTNSSNLSFCQKQNLEYWIQRKKLEKIDNRPIKSKMDQNSELYQQTIQTRIERAPSSACSQYSSFTAGTSNNSNQMPKQNQAKIVNQPENTSSIYYKSPRLANGGMSIVINQTAPIQNIPTIGILQQPAQQQLYQHQVYSEPVRVMNAEYVQQSQNLVNCSESNGVYQLINNQYELSNRQPNVTAYTVRYVCPYCVKNYTSEDFMQIHINKDHNFVCNICNLRLYNFNDLYLHKLNHNVNSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00983878;
- 90% Identity
- -
- 80% Identity
- -