Basic Information

Insect: Frieseomelitta varia
Gene Symbol: PRDM1
Assembly: GCA_011392965.1
Location: WNWW01000247.1:886907-899758[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.4e-05 0.0009 18.8 2.5 1 23 749 771 749 771 0.99

2 5 4.3e-06 0.00027 20.4 5.1 1 23 777 799 777 799 0.98

3 5 8.7e-07 5.4e-05 22.6 4.2 1 23 805 827 805 827 0.98

4 5 0.00057 0.036 13.8 1.5 1 23 833 855 833 855 0.97

5 5 3.8e-05 0.0024 17.5 0.2 1 22 861 882 861 882 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.4e-05	0.0009	18.8	2.5	1	23	749	771	749	771	0.99
2	5	4.3e-06	0.00027	20.4	5.1	1	23	777	799	777	799	0.98
3	5	8.7e-07	5.4e-05	22.6	4.2	1	23	805	827	805	827	0.98
4	5	0.00057	0.036	13.8	1.5	1	23	833	855	833	855	0.97
5	5	3.8e-05	0.0024	17.5	0.2	1	22	861	882	861	882	0.96

Sequence Information

Coding Sequence: ATGGAGGCCAGCGAGTGGGATCACGCGACCTTGAGGGAAGAGGAATTCGAGCAGCATGCCGTATATTTGGTACCGGATGTGGCGGCATCGCCAGGCGATACCAATCGTGCGGAGGCATCCCTGCCAAGAAATTTGGTGCTTAAACCTTCTCAGGCCCTCAACGATGTTTTGGGAGTTTGGAGCACAAGTTACATCCCCAAGGGGACACGGTTCGGTCCTCTTGTTGGACAAGTGTACACCAAGGATTCGGTGCCGGCCGACGCGAACCGGAAGTACTTCTGGAGGGTGTACAAAAACAACGAGCTGTTCTATTACATCGACGGTTATGACGTCCAGAAATCAAATTGGATGCGTTACGTAAACCCGGCTTATTCGTCCGAATCGCAGAACCTAATAGCATGCCAGTATAAGatgaacatttatttttacacaatcAAGCCGATACTACCGAACCAAGAGCTTCTGGTGTGGTATTGCCGAGAGTTCGCAGAAAGGCTCAATTACCCATTAACGGGTGAACTAATGCTTCAGAGAATACGACAACAAGTACAACAATCTACGTTACCAACGGAAATTCCACCCACGGTGGACGTGGTGTCGCCACTGAAGGACTCGTCGATTTACGAGCGACGCTCGCAAATGACCCCGACGGACGGTTCCGTTAGATCGGACGAAGGCTATCATTCGAATGGTTATCACGACGAGATCCTCACGCCCCCGGAAGAAAGCAGCGAATCGGACTCGGAGAACAATTACGTGTTGGATTTCAGCAAGAACGCGAAAACGTCGGTATGCAACAACGAGGTGCTGAAACAGGACAATGCAGTGGCGAAGAACGAGTACAGGAAGGTTAAGATCAAGATCACCAAGACCTACGGGAATTTTCAAGCGTCGAAGAGCCTGGACGCCAACGGGAAGGACAAGGATCAGGAATTGCCGAGCAGGGCGGTGACCCCGGAACTACAGAAACCGTTGTCACCTATAGTTCTTCAAAAGAACACCGTCCTGACGACGGTAACCGAAGACGAGATCCCAGAGAAAAACCCGAAACCTTTCTACGAGTCCGAGGTGAAGGGTGCTTTGCCAGTTTCCGGCAGACCAGCCTATCTCACCAGCCCGAGCAGCTCCATCCTCGAGAATATCCTTCTCCGTAGCAGCACcgataacaacaacaacagccaCAACCATCACCATAACGGCGCTCAGCAACACCACCAACACCATCAGATTCACCATCAAACGCACGTCGACTCGGTCACGCCACCGCCATCTAGCCCAACCGAGATGGCGTACTCTTACAAAAAGTCTCACCGATACGGCAACATTCTGCCCTGCAGTCCCGACTCTAGCTCGAATTTGCCCATGCAGGCGGATACCTGCGTCAACTCCACCACCAGCGGCAACAGCGCTCTACCGATGCAAAGCCCTACGAGTAACCTGCACTCGAGCACAGGGAACCTTCACTCGAGTACGGGCAATCTACACTCCAGCACCGGATCCAGCAACATTCTACAATCTCATCCAGGGAACATCCATTCGTCCAGCAATTCCAACAATCATCACTCCAGCGCGAACGTTTTGTCGTCTAGCACGATACTGACATCTACCAGCAATCTTCACTCCTCGACGACATCCAGTAACTGTATGCCCAAGAGGAAGACCAAGAGTCCGTCACCGTCTGCGAATCCCACGGGCACATCCACCACCCCAACGATCCTGTACTCTAACTCCGCTGGATGTCAAATAGAATCGAGTCCGGTGTATCCTAGCTCGGCAGCGAACAGCAATCAGAGCGTTTCGCCCATTTCACCTATTCAATCGCCTTCGTCCTATCCGTACGGCATTTATCATCAGAACGGTTCGCTGCATCACAACGTGGCACCGTTGTCCATCAATTGCACCGCCTACTCGCCGACGCCTAGCGGGAACGTAGTGTACGAGCGAGCCGACGGAAGAAGGCTGGAGACCGCCACGAGCAACCACCAATTGCCCACTTCGTCGACCATGCAAATCGACAGTAACCAAACGTTAATAGCTGGCACGCACAATCTTCACCTGGGCCATCACCCTGGCCTTACCATTCACGCCAACTCGTCGTCACTCAACCGATACTCGCCGGCGAGCTCTTTGTCACCGGACGATCACGGTTGCTCGCAGAGTGGTTCGCTCAGTCCGAACTCGCAAGGATCTAGGGGTTACAGGTCGCTGCCGTACCCACTGAAGAAGAAGGACGGGAAAATGCATTACGAGTGCAACGTCTGCTGCAAAACATTCGGCCAGCTGTCGAATCTCAAGGTACACCTGAGGACTCATTCCGGCGAGAGACCGTTCAAGTGTAACGTTTGCACCAAGAGTTTCACTCAGCTGGCCCATTTGCAGAAACATCATCTCGTGCATACAGGCGAAAAACCACATCAATGCGAAATCTGTAAGAAGAGGTTCAGCTCGACCTCAAACCTCAAGACCCACCTGAGACTGCACTCCGGACAAAAGCCGTACGCCTGTGACCTCTGTCCCGCGAAATTCACTCAGTTCGTTCACCTCAAGTTGCACAAGAGGTTACACACGAACGAAAGGCCCTACACCTGTCAAGGTTGCGACAAGAAGTACATTAGCGCGAGCGGTCTTAGGACGCATTGGAAGACAACCAGTTGCAGGCCGAATAATATCGAGGACGAGCTTGCCCTTGCCGCGGCCGTGGGTTCGCCGACGTATTACGAATACGGTCCGGACATGAACGTCGGAAATATGCCGAAGGAATGCGAGCTGGAGCACATCGACAACTACGAGAGGCATGGCGCCACGCACGGACCACACTCGACGTCTCTCCACAACCTGGAGAATTCCGTAGGACGGCCAAGCGTCATAGAGACCTCCCAGCCTCACATAATCGAGTGCACCTAA
Protein Sequence: MEASEWDHATLREEEFEQHAVYLVPDVAASPGDTNRAEASLPRNLVLKPSQALNDVLGVWSTSYIPKGTRFGPLVGQVYTKDSVPADANRKYFWRVYKNNELFYYIDGYDVQKSNWMRYVNPAYSSESQNLIACQYKMNIYFYTIKPILPNQELLVWYCREFAERLNYPLTGELMLQRIRQQVQQSTLPTEIPPTVDVVSPLKDSSIYERRSQMTPTDGSVRSDEGYHSNGYHDEILTPPEESSESDSENNYVLDFSKNAKTSVCNNEVLKQDNAVAKNEYRKVKIKITKTYGNFQASKSLDANGKDKDQELPSRAVTPELQKPLSPIVLQKNTVLTTVTEDEIPEKNPKPFYESEVKGALPVSGRPAYLTSPSSSILENILLRSSTDNNNNSHNHHHNGAQQHHQHHQIHHQTHVDSVTPPPSSPTEMAYSYKKSHRYGNILPCSPDSSSNLPMQADTCVNSTTSGNSALPMQSPTSNLHSSTGNLHSSTGNLHSSTGSSNILQSHPGNIHSSSNSNNHHSSANVLSSSTILTSTSNLHSSTTSSNCMPKRKTKSPSPSANPTGTSTTPTILYSNSAGCQIESSPVYPSSAANSNQSVSPISPIQSPSSYPYGIYHQNGSLHHNVAPLSINCTAYSPTPSGNVVYERADGRRLETATSNHQLPTSSTMQIDSNQTLIAGTHNLHLGHHPGLTIHANSSSLNRYSPASSLSPDDHGCSQSGSLSPNSQGSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCEICKKRFSSTSNLKTHLRLHSGQKPYACDLCPAKFTQFVHLKLHKRLHTNERPYTCQGCDKKYISASGLRTHWKTTSCRPNNIEDELALAAAVGSPTYYEYGPDMNVGNMPKECELEHIDNYERHGATHGPHSTSLHNLENSVGRPSVIETSQPHIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00230337;
90% Identity: iTF_00215282;
80% Identity: -