Fvar006508.1
Basic Information
- Insect
- Frieseomelitta varia
- Gene Symbol
- -
- Assembly
- GCA_011392965.1
- Location
- WNWW01000279.1:507119-514728[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00064 0.04 13.6 2.7 1 21 94 114 94 115 0.96 2 12 0.0025 0.15 11.8 0.7 2 21 124 143 123 144 0.95 3 12 0.00062 0.038 13.7 0.8 1 21 172 192 172 193 0.96 4 12 1e-05 0.00062 19.3 3.4 1 23 201 224 201 224 0.95 5 12 0.14 8.7 6.3 0.5 1 21 247 267 247 268 0.87 6 12 0.0014 0.087 12.5 3.2 1 23 276 299 276 300 0.94 7 12 0.0054 0.33 10.7 1.3 3 22 328 347 326 347 0.92 8 12 0.00018 0.011 15.4 9.5 3 23 357 378 355 378 0.97 9 12 0.041 2.5 7.9 0.1 3 22 460 479 458 479 0.93 10 12 8.6e-05 0.0053 16.4 5.2 1 23 487 510 487 510 0.97 11 12 0.0095 0.59 9.9 0.5 3 21 519 537 519 538 0.96 12 12 8.6e-05 0.0053 16.4 3.2 1 23 546 569 546 569 0.95
Sequence Information
- Coding Sequence
- ATGATGgacaaatatcataataatgtcGTCGGTCAGTATCATTGTCGGTTAAAATTGTTGTCGGGCAAACCTGGAgttgatgaaatattgtcgGTGAAAACAGTGTCGGAGAAATCTGTGTCGATTGATTTCAGCGGGAcccgattatttttattgacagccaaaataattttgagaaaaaccatttcttcttcaaataaattaacacaAGATTATTCCAAGCCAAATaaaaGGAGGACGGCTGCAGTAGGACATGTTGGCGTGGCGAACTGCACTTTGCACCAATGCAGTATGTGCGGTAAAACCTATTCCTGGAAGTCTTCGTACCATCGACACTTGCGGGAAGAATGCGGGAACCAACAGAGAGTAAAGTGCAAAAATTGCGGAAGACAGTATCGTTGGCGTGATTCTCTGAACAGACACTTGAAGTACGAGTGCGGAGTGGAACCAAAATACATGTGCTCGACGTGCGACTCGAAGAGGGATCACAATCGGGTTAACTATGATGCCCCGTTTACCTGTTACAAATGTGGTAAACGTTACACGTGGACGGATTCCTTGACCAGACATCTTCGAGAGGGCTGCGGAAAGTTACCTAGGCACAAATGCACCCTCTGCGGCAGGAAATTCAAACGCAGGGACTATCTGCTGCGTCACGAAAATAACGTTCACAAAGCAGAaaaGTGCATTGTTCTTTCAGCTTACTGCGGTTCTGACTATTACAAGAGACTTGGCCGACACTTCTGTTCGAATTGTGGCAAAGAGTACAGATGGATGCAATCCTTGGTTAGacacgaaagagaagaatgcgGGAAGGAGCCGCAGCACAGTTGTCCCGTTTGTGGGATGAAAATACGCCACAAATGGATGTTAAAGAAACATTTGATCAACGTTCATCATTGGGTTATTTCGAATGGGAAGAACGTTTACCTCGGGCCGAGTGACGGTTTACCGATTTTTGTGTTTCGTTCGAGCCATCTGTGTAACAACTGTGGAAAAACGTATAAATGGAAAGAATCGTTGAACTTACACAAGCGTATGGAATGCGGTATTGAGCCACGATTCGGTTGCAAAATCTGCGGAAGAAGATTTAAACACAAACACCATCTCGCGAAGCATCATAAATCGATACACAATTACGTTGACGTGCCTGTGCTACAAGCTTCGTTGTGCGGCGACCACTCGAGAAACTGTATACCCGTGCAGAGTGTGCGGCAAAATCTACTCGATAAAATCTTCCATGTATACGCATCTCCGCCTATGCGGAAAGGAACCGAAATTCAACTGCGTTCTCTGCGGGAAGAGGTTCAAATACAAGCACAGACTGCAGTCGCATCTTACCTCAAATTTGCACAATCAGGAAAGGAAGCGTGGATTTGCTTTCGATGTGGCAAACGTTATCAATGGCGTGCTTCCTTGAAGAATCATATCCGAGTGGAATGCGGCAAAGAACCTACTTTCAAGTGTCCAATTTGTGGCAGGAAGTTCAAGCATAAACATAGATGGCAATCACACGCGAAATCCATGCACCTCTTCTCGAAGAAAATGTGGTGGTGCTCTCAATGCGGCAAGCGATACATGTGGAGGGACTCGTTGAAGAAGCACCTGCGAGTCGAGTGCGGCAAGGATCCTACGTTCGAATGTCCCATTTGTGGCCGAAAATTCAAGCATAAACATCGTTGGCAGTCGCACGCTAAACTGATTCATTATGTTACCATTACCAAGGCTGACGGTGAAGAACATCGAAAATCTACGATACAAAAGACGGCCGGTGATTCACAAGTGCACCAGGTGTGGAAAGGGTTATCAATTGGAAACCTCGCTACGAAGACACCAAAGACTCGAATGTGGGGTGGAACCGAGGCAAAGCTGTCAAATTTGTGGGAAAAAATTCACTCATAG
- Protein Sequence
- MMDKYHNNVVGQYHCRLKLLSGKPGVDEILSVKTVSEKSVSIDFSGTRLFLLTAKIILRKTISSSNKLTQDYSKPNKRRTAAVGHVGVANCTLHQCSMCGKTYSWKSSYHRHLREECGNQQRVKCKNCGRQYRWRDSLNRHLKYECGVEPKYMCSTCDSKRDHNRVNYDAPFTCYKCGKRYTWTDSLTRHLREGCGKLPRHKCTLCGRKFKRRDYLLRHENNVHKAEKCIVLSAYCGSDYYKRLGRHFCSNCGKEYRWMQSLVRHEREECGKEPQHSCPVCGMKIRHKWMLKKHLINVHHWVISNGKNVYLGPSDGLPIFVFRSSHLCNNCGKTYKWKESLNLHKRMECGIEPRFGCKICGRRFKHKHHLAKHHKSIHNYVDVPVLQASLCGDHSRNCIPVQSVRQNLLDKIFHVYASPPMRKGTEIQLRSLREEVQIQAQTAVASYLKFAQSGKEAWICFRCGKRYQWRASLKNHIRVECGKEPTFKCPICGRKFKHKHRWQSHAKSMHLFSKKMWWCSQCGKRYMWRDSLKKHLRVECGKDPTFECPICGRKFKHKHRWQSHAKLIHYVTITKADGEEHRKSTIQKTAGDSQVHQVWKGLSIGNLATKTPKTRMWGGTEAKLSNLWEKIHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -