Fvar001330.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frieseomelitta varia
Gene Symbol
-
Assembly
GCA_011392965.1
Location
WNWW01000676.1:92073-96009[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.038 2.4 8.0 0.6 6 23 314 331 311 331 0.92
2 13 0.071 4.4 7.2 0.7 1 23 336 359 336 359 0.95
3 13 0.00037 0.023 14.4 0.2 3 20 373 390 371 391 0.94
4 13 2.3 1.4e+02 2.4 0.9 8 23 422 437 407 437 0.68
5 13 2e-07 1.3e-05 24.6 1.6 2 23 481 502 480 502 0.97
6 13 0.0035 0.22 11.3 0.5 1 23 507 530 507 530 0.93
7 13 0.74 45 4.0 1.6 2 23 604 625 604 625 0.96
8 13 2.9e-05 0.0018 17.9 3.8 1 23 634 656 634 656 0.95
9 13 2.6e-06 0.00016 21.1 3.1 1 23 665 687 665 687 0.99
10 13 0.07 4.3 7.2 5.9 1 22 693 714 693 714 0.95
11 13 0.00037 0.023 14.4 2.8 1 23 740 762 740 762 0.99
12 13 0.16 9.8 6.1 0.0 1 23 827 850 827 850 0.97
13 13 1.3e-06 8.2e-05 22.1 4.7 1 23 855 878 855 878 0.96

Sequence Information

Coding Sequence
ATGCGGATTTTAAAAAATGAGGATCACTCGCTGAAACGTCCGGATGGCATGCGTTACGTGACTAAAGGAAAAATGCACGCGCtgtttaattgcaattttgtaacTGGACTCTTACGTTCGGGGACGTTGTGGAAAGACAACGGTACACTACCAAATTTGTTTACAATGGCTGTGCCTAACAAGTGGGAGAATGTTTGTAGATTATGCTCGGAAGAGAAGAACGAGATGCTGTCGATTTTTGGCAATGAAGGTGTACAACGTAAAGTGGCGCAAAAGCTACGTGCCTGCCTGCCAGTCTTAGTGTACAAAACCGATCCACTGCCAAAGCAAATATGTCAGTTCTGTGCCGCCAGGCTGGATGACGTTTACGAGTtcagagaatattgtttaagCGTTTACAAGAGCATGCATTTGAAGCTGTTAGCTTATAAGAATGTTGAATctgttcaaatttatttagaagCGATGAAAAATTCCCCAGATCCTTGTCAgGCTCAACTATGGAGAGAAAAAGCTAGAGCACCGCCACCTTTAGTACCTTTGCCAGTTTCACTGCCAGTTGAAAGTCCATCAATGTCAATGGATGTTAGCCAGGAGCATCAAAATAATTGCATGGAGTCGTTACCTGAATTACCATGTGAAGTAGAGATCAAAGAAATGACTACAGAACCAATATTAGGAACAAGTGTTAATGTGTACGAATCGtcacataaaaataatgtagaaaatgaactgtataataaattagatataataatggAACAAAATACAAGTTTATTAAAAGAGGAAAGCAATAACTTGAGACAAGGAGTACAAGtaaaggaggaagaaaagaggacGAGTATTTTAGAACAAGTGCTAATGGGTAGTTTGACAATGAACGACAGAAAAGACttaaattcaaaaacaaaGCTATCCTCTAAGTGGTGGTGTGCTCCTTGCAATAGTTATTACAGgaCAAAGGAAAGTTTAATGAAACACATGCAATTACATTGTCCAAGAAAGTACAATTGCAGAAAATGTTCTGCTTGCTTTGAGTTGGTAGAAGACTTGGCTAAACATGAAGCTACCAATCACTTAAAAGTAACGTTAGACTTTGATAGAAGTGTTCTAGATTGTGATCAATGTGACAGACAATTTGTTAGTTGGGAAATGCTGAAAAAACACAGATTATGTGATCATTTAactcaaataaatgaaattgggTCCAATACATGGTGCTCCTTATGCAATAGGTTttttgatttaatttcttcacttCATAGATTTTTTCCAAGTATGGAAAATTATCAAAGTCATATTCAGTTACATGAAATCAGTAATTATACATCAACAAAAGCATTACAATTAATGAATCAACAGTCAGTAAAGGTTctcaaaaatgaagaaacttcAAAGGAAGTAAAGAGGGAACACTTTGCAGATGCTTCTAAATCACTTACTTGTCCTACTTGtggaaaaATCTGTACTCAACAAAGTGCGTTATCAAATCATATGCGCACTCATGAACCAAAAAGACATAAATGTGATATATGTGGACGATCATTTGGACTTTTTATACGTTTAGCAGCCCATAGAATGAGCGAACACAGTCAACAACCTACAATGTCGCCCGTAATGGCTAGTGTTGAACAAGAAGAAGCTTTGAATGCTGAAAGAGAAGCTAAAGAAGCAAGAGAAGCCAAAACTCGCGCATCAAAAACTAGAACATATTCAGAGatGATAGAAAGAGAGGATATTCCTAACCATGAAGAACCACCTCCAAAAAGAAATGTTCCATTAAATACCaatgcatttaaaaatgtgGCAAGATGTGGTATCTGTTTACAATGGTTTAGTGATCACACTACGATGTTAACGCATTTACAAACACATTCGGATAATTAcacttgtaaaaatttcacctgccatatatgtaaaaaatcttttaaagaaAAGTGGCAATTATTTAGACACgaggTATCTCATAAACCAACTGACTCTGCAACAATGTACACATGCACAGTATGCAACAAATCGTTCGTAgataaaaatacgtataaaatgCATCAGAAAACGCACATTGTTGACAAAACATATCACTGTCCTAAGTgtaataagatattttttaaagaagtaTGTTTGCTAACTCATCAGTGCACAGAAACTGTGTTCAGTAAAAAAGCAGTTTCCTCAAAATCTTCGCAAAAGTCTGCCTCGTTGAGTAACAGCAAAAGGTATAAATGTTCCAAATGTAATGCGTCTTTCAATAGTTTTCAGTCGAAAAATTCTCATATGAGAGTGCACATGGAAAGTTCACATACAACGgTACGAAAGCAAGATTTAAAGGAAGaatcagaagaagaaaaaactatGCCGAAATTAATTCCTGAGACGTCATTGGAATATTCGGTTTCTACTATCGAaccgaaaatagaaataaatgaagaaagtaCACCACCTCCAGTTAAACGAACTTTAATCAGGACAACCGGCGGgtATCGCTGTGGAGTATGTCAGTCTCCATTTATTTTACGAGAATTAGCTGTTGCACATTTGAGATCTGCACATCCTTTGATGCCATATCAATGCCCTTACTGTAAAAAAAGGTTTACCACGCAATATACATTCACACATCATATTAAAGCAGATCATCCTGATGAGCATGAGAATTGA
Protein Sequence
MRILKNEDHSLKRPDGMRYVTKGKMHALFNCNFVTGLLRSGTLWKDNGTLPNLFTMAVPNKWENVCRLCSEEKNEMLSIFGNEGVQRKVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDVYEFREYCLSVYKSMHLKLLAYKNVESVQIYLEAMKNSPDPCQAQLWREKARAPPPLVPLPVSLPVESPSMSMDVSQEHQNNCMESLPELPCEVEIKEMTTEPILGTSVNVYESSHKNNVENELYNKLDIIMEQNTSLLKEESNNLRQGVQVKEEEKRTSILEQVLMGSLTMNDRKDLNSKTKLSSKWWCAPCNSYYRTKESLMKHMQLHCPRKYNCRKCSACFELVEDLAKHEATNHLKVTLDFDRSVLDCDQCDRQFVSWEMLKKHRLCDHLTQINEIGSNTWCSLCNRFFDLISSLHRFFPSMENYQSHIQLHEISNYTSTKALQLMNQQSVKVLKNEETSKEVKREHFADASKSLTCPTCGKICTQQSALSNHMRTHEPKRHKCDICGRSFGLFIRLAAHRMSEHSQQPTMSPVMASVEQEEALNAEREAKEAREAKTRASKTRTYSEMIEREDIPNHEEPPPKRNVPLNTNAFKNVARCGICLQWFSDHTTMLTHLQTHSDNYTCKNFTCHICKKSFKEKWQLFRHEVSHKPTDSATMYTCTVCNKSFVDKNTYKMHQKTHIVDKTYHCPKCNKIFFKEVCLLTHQCTETVFSKKAVSSKSSQKSASLSNSKRYKCSKCNASFNSFQSKNSHMRVHMESSHTTVRKQDLKEESEEEKTMPKLIPETSLEYSVSTIEPKIEINEESTPPPVKRTLIRTTGGYRCGVCQSPFILRELAVAHLRSAHPLMPYQCPYCKKRFTTQYTFTHHIKADHPDEHEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01123225;
90% Identity
iTF_00983144;
80% Identity
-