Basic Information

Insect: Frieseomelitta varia
Gene Symbol: Pkg21D
Assembly: GCA_011392965.1
Location: WNWW01000835.1:419732-435007[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0035 0.22 11.3 0.0 2 20 1489 1507 1488 1508 0.94

2 13 0.78 48 3.9 4.3 1 23 1516 1539 1516 1539 0.93

3 13 6.5e-06 0.0004 19.9 0.9 1 23 1545 1567 1545 1567 0.98

4 13 0.00011 0.0065 16.1 1.9 1 23 1715 1737 1715 1737 0.97

5 13 0.0067 0.41 10.4 0.3 2 21 1747 1766 1746 1767 0.93

6 13 0.00061 0.037 13.7 2.6 1 20 1789 1808 1789 1811 0.92

7 13 0.029 1.8 8.4 0.7 1 23 1816 1839 1816 1839 0.95

8 13 2.5e-06 0.00016 21.2 0.3 1 23 1845 1867 1845 1867 0.98

9 13 0.0042 0.26 11.1 6.3 1 23 1874 1896 1874 1896 0.98

10 13 0.00071 0.044 13.5 0.4 3 23 1904 1924 1902 1924 0.97

11 13 0.00082 0.051 13.3 0.2 1 23 1930 1953 1930 1953 0.96

12 13 0.41 25 4.8 0.1 1 23 1967 1989 1967 1989 0.94

13 13 0.0026 0.16 11.7 0.0 2 23 2241 2262 2240 2262 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0035	0.22	11.3	0.0	2	20	1489	1507	1488	1508	0.94
2	13	0.78	48	3.9	4.3	1	23	1516	1539	1516	1539	0.93
3	13	6.5e-06	0.0004	19.9	0.9	1	23	1545	1567	1545	1567	0.98
4	13	0.00011	0.0065	16.1	1.9	1	23	1715	1737	1715	1737	0.97
5	13	0.0067	0.41	10.4	0.3	2	21	1747	1766	1746	1767	0.93
6	13	0.00061	0.037	13.7	2.6	1	20	1789	1808	1789	1811	0.92
7	13	0.029	1.8	8.4	0.7	1	23	1816	1839	1816	1839	0.95
8	13	2.5e-06	0.00016	21.2	0.3	1	23	1845	1867	1845	1867	0.98
9	13	0.0042	0.26	11.1	6.3	1	23	1874	1896	1874	1896	0.98
10	13	0.00071	0.044	13.5	0.4	3	23	1904	1924	1902	1924	0.97
11	13	0.00082	0.051	13.3	0.2	1	23	1930	1953	1930	1953	0.96
12	13	0.41	25	4.8	0.1	1	23	1967	1989	1967	1989	0.94
13	13	0.0026	0.16	11.7	0.0	2	23	2241	2262	2240	2262	0.96

Sequence Information

Coding Sequence: atGCGTTATAaagGAGTCAAGAGAGTGTGCTTTCGTCATGGTTTGGACGAAGAACGTATGATGAGGTTCTCGTGCTTCCCGAGACCAAGTATCCTGGGACAGAGAGGCAGCATCAATCTTGCCTCTTTGTCAGGGAACAACGAGTCGAACAATGTGAACAACGCGAGCATAAATGGAAACGCGAAAAGCCCGGTGGTAACGAGCTACAAGCAAGCTGGTGAACCAGATCTGAGTCATGGTGTGATACGATCCTTACCTGGTGCTGCGGTGATATCTAATGGTATCGGCCCACCTGTACACTCCAGCGGGAAAAGCAAGGCACCATTACCACCTCGACAAAATGACAATCATCTTCCAACGCACCATGAGAACGAAGAAGAGGCTGCCAGAAGTTCGGACGGTTCTGACCAGCCCGCAAATCCCAGAGGCGGTGTTATCGGTAGAACTCCAACACCACCCTCTGCACCAACTCCGATTTACGAGAAAGAccaaaaGAGTAGACGACAGATTACAAGGGCTATTTTGGAAAACGAATTCCTTGGTAATCTCGAAGAAAATCAGGTGGAAGCGCTGGTTTCTGCTATGTACTCGAAACAAATACCACCTAATACTTTGGTGATTCGAGAGGGAGACATAGgaTCACATCTATACGTATCAGCAGAGGGAGAATTCGATATTTATCAGGGTAACAAGTTTCAAAGAAGCTTTGGTCCTGGTGTCGCCTTCGGCGAGATTGctttattgtacaataccAAAAGACTTCGATCTATCAGCGTGAAAAAGGGTGGAAAAGTATGGGTGCTCGACCGATCCGTGTTTCTCACTGTGATGATGAAAACAGCTCAGGAGAGGCTGGAAGGGAACGTTCGATTCCTTCAACGAGTTTCTGTCCTACAAAAATTACCGGAGCCGAAGGATCATGTGCTTGCTAAAATCTCTGATCTTATCCGCGTGGAATTTTATCCAGCTGGAGCGAAAATAGTTAAACAAGGAGAGAAAggcgataaattttacataatcaGCGGTGGAAATGTTAGGATAACGAAAGACACTCCAGATGGTGGCGAAGAAGAACTAGTGGTCCTTGGGAAGGGTCAATACTTCGGAGAAAAAGCTCTTTACGATGATATCGGTGAAAATCGACGACATGCTAATGCCATTGCACTGGCACCTGGTGTCGAGTGTTTAACATTGGATCGACAatcCTTCCTGAATTATTTAGGTGGTCTCGACGAAATTCGCAATAAAGACTGGCTGCAGGAGTAcgaaaaacagaaacaatccctgacattaaagaaatggaCTAATGAGTACTCAAACGTCACTTTGGCCGATTTAGAGACCAAAGGTACCTTAGGAGTTGGTGGATTTGGCAGAGTGGAATTGGTCGTTCTAAAGTCAGACTCTGAAAAGAGTTTTGCTCTGAAGAAGCTGAAGAAGAAGGTAATGGTCGAACAACAACAGCAGGAACACGTGTTGAATGAAAAACACATTATGCAAGCCTGTGATTCTCCGTTTATATGCAAacTCTATCAGACGTACAAAGATAGCAAATATGTGTACTTCCTGATGGAAGTGTGCCTAGGCGGAGACGTATGGACAACCCTTCAAAGGAGAAGATACTTCGATGACTCAACTGCACAATTCATGGTAGGATGCGTGGTGGAAGCACTCGATCACCTTCACTCGATGAACATTGTTTATCGTGATTTAAAACCAGAGAATCTTATGCTCGATACACGTGGATACTTGAAACTAGTTGACTTCGGTTTCAGTAAAAAGATTGGACCATCCAAGACGTGGACCTTCGCTGGTACACCTGAGTATGTGGCgccagaaattattttaaacaaggGGCACGAtagagcGGTAGATTACTGGGCACTCGGGATTTTAACTCATGAGCTGCTCATTGGTAAACCACCATTTCGAGGTTCCGACCACATGTCAATTTATAACAAGATTTTAAAGGGTATTGAGGTAGTTGGAATACCTAATTCCACTAGCAGAAACGCCAGTAGTCTCATCAAGAAACTTCTTCGCCTAAGTCCCTCTGAACGTCTTGGGTATCAAAGAAATGGCATCCAGGACATTCGAGACCACAAATGGTTCAACGGATTTAATTGGCATGCCTTGCAAAGATTAACTTTGCCAGCGCCGATCGTTCCAACAAATTTCAATGAACAAGAGTTCAATCAACGAAACTTTGACGCTTATTATCGACAGTTGTCCCAGCAAAGGAAACACGGTGTCATCGGCGAAATAAACGTGTCCACCAGTACACCGATCCCCGTTTTCAAGAAAGATGAAAAGACGAAAAAACTGATAAAGAACGCGATTTTAAGCAACAAGTTCCTCGAAGATCTCGATGAGTCGCgaatagagaaatttatttcgataatgTACCCAGAAGAAGTAAAAGTCAACACACGGGTCATTCGCGAAGGTGAAACTGGATCCCATTTGTACGTTTCGGAAGAGGGAACCTTCGAAATTTACGTAGGTAACACGTATTACGGAAGCTTTGGCCCTGGCGTCGCTTTTGGAGAATTGGCCTTGTTGTATAATACCAAGAGACAGAGTTCAATCCATGCGAGtacaaatggaaaattatggGTGTTAGAGAGATACGCGTTTCAAGCGATAATGTTGAAAAGCAACGAAGAATCCTTGGagcagaatttaaaaattctccgtCAGATTGATATCTTCAGAGACCTACCGGAGGAAATTCTTCTGAAAATATGCGATCTTATAATGGTGGAATTTTATCCGGCAAACACGTACGTGGTTCGGGAAGGAGAAAGGGGGGATAAGTTCTACATTATAAACAGTGGAAGCGTGAGGATCACGAAGAATAACTCAAGTGGCATGGAAGAGGAACTAATGATCCTTGAAAAGGGTGACTACTTCGGTGAAAAAGCACTGTACTCCGAGGAATTTCGTCGGCAAGCGAATGCCATCGCAATGGCTCCTGGACTGGAATGTTACACTATtgagaaaaaAGAGTTTCTAGATTATCTCGGTGAATTGGATtcgatcaaaaataaaaattggtcAGCATATCAGAGTGTGATCGAAACGGATGAATGGgacgatgaatttaaaaagataactCTGTCTGATATTGAATCTGAAGGAATACTCGGAACTGGGGGCTACGGCAGAGTGGAACTGGTTGTTGTGAAATCGATGCCTAATATTAGTTTTGCCAGAAAAAAGGTGGAGAAGCATATGATCACGCAAGGTGGCTTTCagaaaatgatttacaatgagaaaaataatttgaaactgtGTAATTCACTGTTTACCTGCAAATTATACAAAACCTTTAAAGACAAACGATACCTATATTTCCTATTGGAAGCGTGTTTAGGAGGAGATTTAAGAACAGCCTTATATAGACATGGtcaattcaataattcaacaaCTCGATTCATCATCGCTTGTGTCATAGAAGGTATTCGACATCTCCATTCACTGGGCATCATCTACAGAGATCTAAAACCTGAGAACATCACTGATTTTGGATCCAGTAAAAAGATTGGTCCTTACAAGACAAAGACTTTTATGGGTACACCAGAATATTTGGCTCCAGAAATCATTCAGAGTAAACTTTATGATCAagCTGTCGACTATTGGGCTCTTGGGATTCTTACGTACGAAATGTTAACAAATCGAACACCTTTTCAAGATGTAAATGATATCgaagtgtataaaaatattcttcgtgGTTTTAAAGACGTAGTTGTACCATCCATTATTAAAAGCGCGGCAAAGAGTTTCATCAAATCTCTATTACAAGATGATCCATATAAAAGACTCGGCTGTTTACGATACGGTGTTGCCGATATTCATAATcacaagtGGTTCCATCACTTTAATTGGCAAGAATTACAAAATCAAACAATACTTTCCCCTATTGTACCAAcgGTGAAAAATCATCTTGATTTAAggaatttcgataaatatcCTCCAAATCACAAAGCGGTACCGGCTGATTTcattttacaaaaatatcgcATGATGGAAGCTCATGAGAATGAGCAATATGTTACATTTCCTCTTTCGGGAGTACATGATGGTATACAAGATAATATCATATCTCATGAAGAGATATGTGAACCTGTTGACGAATGCGTTCTACAAGAAGGACTCACCGAGGTATCTGTTACAGATGTTAATCCTAGTATTACAGAAGCACAAGTTGCAGTTGAGATTTTAGCTGAACATTCCGATGAGGAGGATGAAAATCGTGTAGTGTatcctatatatattaaacaagaaGAACAACAGCAATATACATCTGGAGATGACGAATCCATGGCTGTGGAAGCCCTTCGACAACTTGGGGGCATGTATCCTTGTTTTGAAGATAAAAAAGTATCTTGTCCGCATTGTGCAAACCTTTTCACACAGACTGAGATTACAAAGCATCATACTACCTGTTCTGGTAGTAAATTATCATGTGTTACTTGTggagaaagatttgaaagaaaaatagatttaaacAACCATATAGTTTGTCATCAAGTAGATCGCCCACATGCTTGCAGAACTTGTGGcaatttgtttcgttcaaagaataatttaagatGCCATATGTTGCAAGTACATCAAGTAGAAAGACCTCATAAGTGCACCATATGTGGAGCAGATTTTCAGAGGCCTTCTAGTTTATCCAAtcatatgaaaattcatacaTATGTCGCTGGACGTGCCATTATGCAGGGTAATAATGTGTCACAATCAGAAACATTTAGAAAATGGCCTGAAAATATGACAGAATCTCAAAATAATCAAGTGCCATCTTCATCTGTTCAAACAGTTCAAAGTTATGATACTGTTCAATGGACAGTTCCTTCTTATAACTTTCAAAGTGAACAAACAGCAGTTAATACAATATCCAACcctgaagaaaaaatagataCTTTGCATGAATTTACTGTAATGCCAAATGGAGAAGTGACGCAATTTGAATATAcgcaacaaaataatataaatactcaAGTCAATCAACAATACAATCTTTCATTAAACTCATTTAATAATGCTGATACAATGGTGAAAGTTGAAACATTACCATATAATAATGAAGATAGAAAGAATTATATAGAAGttgaaacaaatgatacaAAACAGCATACTTGCAGACATTGTGGAATTAGTTTTTCTCGTGCAACAGCACTAGTGTCCCATGAAAAAATTCATGCATCTAAAAATTGGAACATGCCAATCGAATGTGAATATTGTGATAAACAGTTTCAAGATGGCAATCATTTAGCAACGCATCAAACAACTTGTGCAAAGAGACTGATGCAAAGTAATGTGGAACAAGGTACATCTAATAATAAGTGGGGTAAACATGCATGTTCTGAATGtggtaaaaaatttacaaccaaacaaaaaatgtttagaCATCAGTGGATTCATAGAAAGAAAACACATTCTTGTGAAGTATGTGGATCCCAATTTGAAAAACAGAATCAATTGGATGAACATAGATTATCAGCACATCCTGGTGACTCTCCATTTACTTGTACAGAATGTGGCAAAAGTTTCGTATCACGTCAAGGACTCTGGGAACATGGTAGAACACATGCTGGGAGTCCTGCGCATTTTCATTGTGATACATGTTCCAAAACATTTTCATCAAGACAAGGATATCTAATACACCATAGGACTCATACTGGGGAAAGACCATATGGTTGCAAATTTTGTTGGAAAGCATTTAGAGATGGTGGGACATTAAGAAAACATGAACGTATTCACACAGGAGAAAGACCTCATGTTTGTCCTTTATGTTCAAGAGCATTTAATCAAAAAGTTGTTTTAAGAGAACATGTTCGATGGGTTCATGCAGCAGGAAAGAATGAAACTGAAGTAACTGGACCTCCTTTCTCATGTCCTATATGTGGTGCTTTAAATCAAGATCGAGATGAATTATGTGCACATATTGTTAAACATTCAGACCAAATGATTGCAGAAGCAAAAgctaaaacaaacaataatgCTCCGAAAACCAAGCCAGTTAAGAAGAAATCAAAAGCATCTACAAGTACAAGTTTACAAGAAAAACAAGGCACTGGAAGtcgtataatttctaaatcagAGGAAAATGAAGCACTTTTATCTATTACAGAAACAGATAAATCAGATGACCAACAAATTTTAAgtgataaacaaaataatacttttcttGTTGTTACTACAGAAAaacgtaatgaaaattatatttcaatatctgaACTTAAATCTGAGGATGTACAATTGTTAGTTGATGAGAAACATGAAGATGAAGATATGCATATTTCACAAACTAATCATAACCATAGAGAATCTTTAAATACAAGTCATATAGTCTCTACAGAGCAAGAAAGAAGTGCACTTCACACAAGCAGCCATAATGCAATAACTACAATGCATTTAATACAAACTTCAAAGCAAGAAAAtactttacatttaatatcaaaacAAAATGAATCATTGCCTGTTCTAACATTACCAAATTCTCAAAGCCATGAAAATTTTCCCAGTCAAATTGCACAAATAAGTAATGATTTACCTATGGACATGGTAACTCACCATTCAACTAGACAAAGTCAAAATATCAAAGATGAAGTTGTAGAAGAATCGTTAATACAAGAAGGAGGATCGCAAACGGCTGTAATACAGGTTGTACAATATCATCAACAAGACAGTGATGATGGAGAGGAATTAGTCTGTGGTATTTGTGGAGAAGATTTTAATGACAAGAATGTATTAATGGAACATGTTAAAATtcacatataa
Protein Sequence: MRYKGVKRVCFRHGLDEERMMRFSCFPRPSILGQRGSINLASLSGNNESNNVNNASINGNAKSPVVTSYKQAGEPDLSHGVIRSLPGAAVISNGIGPPVHSSGKSKAPLPPRQNDNHLPTHHENEEEAARSSDGSDQPANPRGGVIGRTPTPPSAPTPIYEKDQKSRRQITRAILENEFLGNLEENQVEALVSAMYSKQIPPNTLVIREGDIGSHLYVSAEGEFDIYQGNKFQRSFGPGVAFGEIALLYNTKRLRSISVKKGGKVWVLDRSVFLTVMMKTAQERLEGNVRFLQRVSVLQKLPEPKDHVLAKISDLIRVEFYPAGAKIVKQGEKGDKFYIISGGNVRITKDTPDGGEEELVVLGKGQYFGEKALYDDIGENRRHANAIALAPGVECLTLDRQSFLNYLGGLDEIRNKDWLQEYEKQKQSLTLKKWTNEYSNVTLADLETKGTLGVGGFGRVELVVLKSDSEKSFALKKLKKKVMVEQQQQEHVLNEKHIMQACDSPFICKLYQTYKDSKYVYFLMEVCLGGDVWTTLQRRRYFDDSTAQFMVGCVVEALDHLHSMNIVYRDLKPENLMLDTRGYLKLVDFGFSKKIGPSKTWTFAGTPEYVAPEIILNKGHDRAVDYWALGILTHELLIGKPPFRGSDHMSIYNKILKGIEVVGIPNSTSRNASSLIKKLLRLSPSERLGYQRNGIQDIRDHKWFNGFNWHALQRLTLPAPIVPTNFNEQEFNQRNFDAYYRQLSQQRKHGVIGEINVSTSTPIPVFKKDEKTKKLIKNAILSNKFLEDLDESRIEKFISIMYPEEVKVNTRVIREGETGSHLYVSEEGTFEIYVGNTYYGSFGPGVAFGELALLYNTKRQSSIHASTNGKLWVLERYAFQAIMLKSNEESLEQNLKILRQIDIFRDLPEEILLKICDLIMVEFYPANTYVVREGERGDKFYIINSGSVRITKNNSSGMEEELMILEKGDYFGEKALYSEEFRRQANAIAMAPGLECYTIEKKEFLDYLGELDSIKNKNWSAYQSVIETDEWDDEFKKITLSDIESEGILGTGGYGRVELVVVKSMPNISFARKKVEKHMITQGGFQKMIYNEKNNLKLCNSLFTCKLYKTFKDKRYLYFLLEACLGGDLRTALYRHGQFNNSTTRFIIACVIEGIRHLHSLGIIYRDLKPENITDFGSSKKIGPYKTKTFMGTPEYLAPEIIQSKLYDQAVDYWALGILTYEMLTNRTPFQDVNDIEVYKNILRGFKDVVVPSIIKSAAKSFIKSLLQDDPYKRLGCLRYGVADIHNHKWFHHFNWQELQNQTILSPIVPTVKNHLDLRNFDKYPPNHKAVPADFILQKYRMMEAHENEQYVTFPLSGVHDGIQDNIISHEEICEPVDECVLQEGLTEVSVTDVNPSITEAQVAVEILAEHSDEEDENRVVYPIYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKVSCPHCANLFTQTEITKHHTTCSGSKLSCVTCGERFERKIDLNNHIVCHQVDRPHACRTCGNLFRSKNNLRCHMLQVHQVERPHKCTICGADFQRPSSLSNHMKIHTYVAGRAIMQGNNVSQSETFRKWPENMTESQNNQVPSSSVQTVQSYDTVQWTVPSYNFQSEQTAVNTISNPEEKIDTLHEFTVMPNGEVTQFEYTQQNNINTQVNQQYNLSLNSFNNADTMVKVETLPYNNEDRKNYIEVETNDTKQHTCRHCGISFSRATALVSHEKIHASKNWNMPIECEYCDKQFQDGNHLATHQTTCAKRLMQSNVEQGTSNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNQLDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVTGPPFSCPICGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNAPKTKPVKKKSKASTSTSLQEKQGTGSRIISKSEENEALLSITETDKSDDQQILSDKQNNTFLVVTTEKRNENYISISELKSEDVQLLVDEKHEDEDMHISQTNHNHRESLNTSHIVSTEQERSALHTSSHNAITTMHLIQTSKQENTLHLISKQNESLPVLTLPNSQSHENFPSQIAQISNDLPMDMVTHHSTRQSQNIKDEVVEESLIQEGGSQTAVIQVVQYHQQDSDDGEELVCGICGEDFNDKNVLMEHVKIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -