Fvar003393.1
Basic Information
- Insect
- Frieseomelitta varia
- Gene Symbol
- -
- Assembly
- GCA_011392965.1
- Location
- WNWW01000005.1:70058-79379[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0095 0.59 9.9 0.2 3 23 852 874 851 874 0.94 2 10 0.007 0.43 10.4 0.9 1 23 880 904 880 904 0.98 3 10 0.00021 0.013 15.1 0.2 1 23 910 934 910 934 0.96 4 10 0.00027 0.017 14.8 0.2 3 23 942 964 940 964 0.93 5 10 0.0043 0.27 11.0 3.9 1 21 971 993 971 995 0.95 6 10 7.8e-05 0.0048 16.5 0.4 2 23 1003 1026 1002 1026 0.95 7 10 6.7e-06 0.00042 19.8 1.5 1 23 1032 1056 1032 1056 0.97 8 10 4.7e-05 0.0029 17.2 0.6 1 23 1062 1086 1062 1086 0.95 9 10 7.6e-05 0.0047 16.5 1.2 1 23 1092 1114 1092 1114 0.99 10 10 4.8e-05 0.003 17.2 1.1 1 23 1192 1217 1192 1217 0.96
Sequence Information
- Coding Sequence
- ATGGCGAGGCAGGCGTGTGTGGCGCTTTGGAGAGCGGAAAATGGGCACCAGGTACCGTTGTTCAACAGCTGTTCGTTGATCCAATCCGTGCTAAAGCGAAACGTCAGATGGTTTTGGTTCCGGAAGTCGAAGGATCGGCCGATCGAACGTGGCGCAAGCCGCTGTGGAGAACACTTGCCACCACCCATGGATCTCGTTTGCAGGGGCAGTCCCTCCAGGTGTCTCGAATTTGAGAGAGCTGAAAAGAAAGCAAAGGGTGGgttctttcgttttaaaaagCAACCAGAGACGCCAGGGGACAAGCCAAGCAATTgcaagaaagaggagaaaccTTCCAAGGAAGAGAGGTTCACTTGGCGGGAGACGATGTTTGGCCCAAGATCCAAGAAACTTTGGCCTGACCCATGCACCTGCAGGTTGGCtcagagagagaggaagaagatgAGAACGCGTGATCCAAGACTGCGCGATCCGCGATACCAGCAAACCAATGGGGACGTTTTTCTGTACACAGTGCCAACGAGACGACGCTCGGTATCTTCTTGTTTGGAGCCACAACCGAAACCTCCGCCAGCCTACATGATGCCCAAAGCAGCGTTTGTCAAGCTGATGGCCGATAATTCTTACGTGGTGAGTGATGATACTTTTGTCGAGGTAACGCTGCTTAATCGCCAGGCTATCGCGCAAAGACATGACATTGAGAAAAGTATGCAATTAGAACTGCGTAGCCTACCGTACGAAGAATTAAGACCGccagaaagacagagaaaacCATTCTGTTCTCAATTAGGAATTCAATCGGAAAACGTACCTCCGCCGGTAAACAGAGACCTGCATTATTACGGAGGTGATGTTCGACGACAATCGGTCCAGGAACCTAACCTGTCAAACAAGTTGAAATCTTTGCAAAcaaatcaaaagaaattacCCGATATTAGAAGCAATTTGGATCCTCCGATTGGAAAGCGATCTAGAATAGAGCAGTTGAAAATCCTCGTTAGACAGAAAGACATAACGGCGAGGCGCCATCTATCCCGACGTGGTTCCCTTCGTGTGATTCCTTTCGATGGCGGCGTTGTTGCTGTGTGTGGACCCCTATACAGCTGGCTACGGGGCAGTCAAATGTCTCGTAAAGGAATTCCCTCCGCTTGCAAGTCAAAACAAATCCCGCGTATCTTTCGTAATCGACGAGGTTTGTGCTCGATCCGTAGTTGGCCGCAGTGTGAGGCCGGAATCGCGAGCAGTCCGATAGGTTACAATCAATTGAGCTTGTTGTCTGGCTCGCCGGATGAGGAcaaaagagaggaaacgagtaaaaaaggaaaacaggaGGAAGAGGCTAGGGACGACGAGGCTATACGGTATCGGGACAAGGTGTGGATTGAGGATAATCAAGCGACGAGCGGTAGTGTTGCGGGTGAATCGAACGTCGATATCGTTGAGATCGGTAAAGCTGCCGATGTCGAGACAGTAGCCGACATCGAGAAATGGTTGAAAACACGGTCGGAGTCGGTGTCGAGCATGGATCTCGACGCGATCAAGTCCGGGGTCGAGGAGGGCGTCGACCGGTACCTGGGCGAGGAGCTCCAGCACGCTTTTCTGGAAAAGGACCCTGACGGCTTATCCATCGACATTGACCTGTCTGACAAGAAGCTCAATTTAGGTTATGATCCTTTGCTGCAGGAGCTTCAGAGTGAGAAGCTGCTTGACGAGAAGGATAGCTTTATATTGCCAGAGTTTCAGCTGGATCATTTGGATCCGCTCGCGTTGTCTCCGGATGACATGATGGTGGCTGGTGAAATTTTACCCTCGACCAGTGCTCAACCTGCTTTGAGCGTCCCCAACAGCATATGTACAGAAACTGTGCAAACCTCCCTGATGAAGAAAGCCATAACTCCAGATAGCCAGGAATTGCAGAACAAATCTACCCAAGTTGTGGTGGATGATCTACGTTGCGTGGACAACACGACTAAAGAAATTGATCTGCAGAAGGACAGTGGCTTGTGTGATGCTACAAATCTCTATACGCAGGATGTTAATTCTGAAAACACAGTGGACGAGCTGTCAGATGCAAAATTGGACGAAGATGACTCTGATAGTGCAGTAGTTGAACAATTGAAAACGAAGTCTAAGGTAAAATTGGAACCACGTATTATTAAGAAACGTAAGAAAATGCCGGATAcgatggaaaagaaatttaacaatgaGATTAGGATATCTGGGGATGATATTGTAGATACTGAGAATGGTGTAATGGCTGTGGTAGCCATATCGAcggataaaatttcaaatatgacacaaattgttataaataccGGCACAGAGGAACAGATCTATCAAGGGAAAACTTCCGAACTTATAGAAGCTACaggaaattttccaaaattaccaaaaattgAAACCTCGACTGTGTGGAATGGAACGGTGGAACATACTGCGGAAAATCCAAGCAATCAACACGAAATGATAATATCCAATGCCTTGGAAGAATTAGGTATCACAGACGATAACTTGCAACCAATATCAGTTAATGAGCATGGAAAAATATGGCTTTGCCCGCGCGACGATTGCAATAGACAATTTAGCAAACTTTATGCTCTGAAAGGCCATTTACTAGCACACTATGGTGTGAGGCCCTTTAAGtgcGACTTTGAAGGATGTGCCTGGGCATTTTATTCAGAATTCAAACTCAAAAGACACAAAGAAACACACTTGAAACGCAAAGATTATGTTTGCGAAGTAGAAGGTTGTAATCGCCGATTCACTACGATTTACAATTTGTGGAGTCACGCGAAATTGCATACACGCCCAAATAGAATAGTATGCCAAGTGCCAGACTGTCAAGAAAAGTTCCAGACGAAGAGAGCTCTGGAACTGCATATGAAGACTCATGATCAAAGCCATGCTCCGTACGTTTGCAAACACGAGGGATGTGGCAAAAGGTACTACAGTAGTAACGCTTTGACGTCACATCAAAGATGCCATAGCTATAAGGAGGTAGATGTAAAATGCTCGTGGCCGGGTTGTGGAAAAGTATTCGATAAGCCTTGTAGGTTGAAAGCGCATATACGTTCGCATACAGGCTGTAAGCCTTATCCTTGTACGTTTCAAGGTTGCCAGTGGGCATTCTCTTCCTCTAGCAAATTAAAGAGACACCAAAAGAAACACACTAACGAACGAAAGTTTGTGTGCGATATTCCATCATGTGGAAAAGCATTCATGAGGTCAGAGCATCTCAAGGAGCACAGATTGACTCACAAAGAGGGGAGGTACTTTCAATGTTTTATATGTAACGcgaaattttctgcaaaaagTAGTTTGTACGTTCACATAAAGAAGCATCAAGTTAAGGAAGAGGTAGAAATAAATTCGCACGACGATGTCAATAGTCGATCCAAAAAAATACcattgataataaaatcaaaaagaaagtcaATAGATCTGAATGTAAATGTATCTTGTCTGAATACGTCTACGAAAAAATCTGATCGCGATGAtacgataattgaaaataacgatgaaaatcaAACTAAAAACGATATAGTGCCTCCACGAGATCCATCTAAAACCTTATATCATTGTCCAGTCGAAACGTGTACGCGTTCATATACCACAAAAGCCACGCTAAGAGCACACATGTTAAAAGTACATGGCACTCCTGTTGAAGAGTGTAATAAAGCAGCTAATAAAACGCCTGAAGATTCCGTTTGTAACATggattacattttatatactacTCCGTCTGTATCGGAGCCTACAGAGCAAATGATAATGGTAGCACCGTGCGATGCGGTTATTCTCAGCACGCCCTCGGGAACAGATCGCTCTCTTCCTGAACCGGAACCGCCACCTCTTAACAACTTAATAAAAACATCGGAATCCTCGTCAAACACTGCTACGCACAAGCAATTATTCAATCAACATGTAAGAAAAGATCAGGGCTCCGCACGGACTGATTTGACGTTCTCCGACGTGTGGAAATTAAAGAAGACGAATGGTGCTGTATTAGATTCGGTCGTCGGAGCATCCGATGTTGTATTAGGTACAAGTGAATTAGAAGAGGGTTTGTTGCTCACTGAGGAATTGCCTTCGATGTATTATCAAGACGATGTAGTGGGAACAGAGTATCAGGTACTGTTGCTCGATTCAGTATCATCAGAGAATACAATAAATCTACGGGGACTTGAGTAA
- Protein Sequence
- MARQACVALWRAENGHQVPLFNSCSLIQSVLKRNVRWFWFRKSKDRPIERGASRCGEHLPPPMDLVCRGSPSRCLEFERAEKKAKGGFFRFKKQPETPGDKPSNCKKEEKPSKEERFTWRETMFGPRSKKLWPDPCTCRLAQRERKKMRTRDPRLRDPRYQQTNGDVFLYTVPTRRRSVSSCLEPQPKPPPAYMMPKAAFVKLMADNSYVVSDDTFVEVTLLNRQAIAQRHDIEKSMQLELRSLPYEELRPPERQRKPFCSQLGIQSENVPPPVNRDLHYYGGDVRRQSVQEPNLSNKLKSLQTNQKKLPDIRSNLDPPIGKRSRIEQLKILVRQKDITARRHLSRRGSLRVIPFDGGVVAVCGPLYSWLRGSQMSRKGIPSACKSKQIPRIFRNRRGLCSIRSWPQCEAGIASSPIGYNQLSLLSGSPDEDKREETSKKGKQEEEARDDEAIRYRDKVWIEDNQATSGSVAGESNVDIVEIGKAADVETVADIEKWLKTRSESVSSMDLDAIKSGVEEGVDRYLGEELQHAFLEKDPDGLSIDIDLSDKKLNLGYDPLLQELQSEKLLDEKDSFILPEFQLDHLDPLALSPDDMMVAGEILPSTSAQPALSVPNSICTETVQTSLMKKAITPDSQELQNKSTQVVVDDLRCVDNTTKEIDLQKDSGLCDATNLYTQDVNSENTVDELSDAKLDEDDSDSAVVEQLKTKSKVKLEPRIIKKRKKMPDTMEKKFNNEIRISGDDIVDTENGVMAVVAISTDKISNMTQIVINTGTEEQIYQGKTSELIEATGNFPKLPKIETSTVWNGTVEHTAENPSNQHEMIISNALEELGITDDNLQPISVNEHGKIWLCPRDDCNRQFSKLYALKGHLLAHYGVRPFKCDFEGCAWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTIYNLWSHAKLHTRPNRIVCQVPDCQEKFQTKRALELHMKTHDQSHAPYVCKHEGCGKRYYSSNALTSHQRCHSYKEVDVKCSWPGCGKVFDKPCRLKAHIRSHTGCKPYPCTFQGCQWAFSSSSKLKRHQKKHTNERKFVCDIPSCGKAFMRSEHLKEHRLTHKEGRYFQCFICNAKFSAKSSLYVHIKKHQVKEEVEINSHDDVNSRSKKIPLIIKSKRKSIDLNVNVSCLNTSTKKSDRDDTIIENNDENQTKNDIVPPRDPSKTLYHCPVETCTRSYTTKATLRAHMLKVHGTPVEECNKAANKTPEDSVCNMDYILYTTPSVSEPTEQMIMVAPCDAVILSTPSGTDRSLPEPEPPPLNNLIKTSESSSNTATHKQLFNQHVRKDQGSARTDLTFSDVWKLKKTNGAVLDSVVGASDVVLGTSELEEGLLLTEELPSMYYQDDVVGTEYQVLLLDSVSSENTINLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -