Basic Information

Insect: Frieseomelitta varia
Gene Symbol: -
Assembly: GCA_011392965.1
Location: WNWW01000588.1:78361-89176[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.7e-06 0.00029 20.3 1.3 1 23 146 168 146 168 0.98

2 15 0.00061 0.038 13.7 1.0 3 23 176 196 175 196 0.99

3 15 5.3e-05 0.0033 17.0 0.0 1 23 317 339 317 339 0.98

4 15 0.12 7.6 6.4 0.1 1 23 345 368 345 368 0.97

5 15 2.1e-05 0.0013 18.3 2.0 1 23 394 416 394 416 0.98

6 15 1.2 75 3.3 0.0 1 23 431 453 431 453 0.86

7 15 0.37 23 4.9 0.4 2 23 460 482 460 482 0.94

8 15 0.0028 0.17 11.6 3.0 2 19 490 507 490 511 0.95

9 15 0.00014 0.0084 15.7 3.5 3 23 519 539 517 539 0.97

10 15 0.0098 0.61 9.9 0.1 3 23 546 566 545 566 0.97

11 15 5.7e-06 0.00035 20.1 0.4 1 23 575 597 575 597 0.98

12 15 0.0025 0.15 11.8 0.2 3 23 605 625 603 625 0.97

13 15 0.0022 0.14 11.9 0.2 3 23 633 653 631 654 0.94

14 15 0.24 15 5.5 0.0 1 23 668 690 668 690 0.93

15 15 0.0017 0.11 12.3 0.0 1 20 1065 1084 1065 1087 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.7e-06	0.00029	20.3	1.3	1	23	146	168	146	168	0.98
2	15	0.00061	0.038	13.7	1.0	3	23	176	196	175	196	0.99
3	15	5.3e-05	0.0033	17.0	0.0	1	23	317	339	317	339	0.98
4	15	0.12	7.6	6.4	0.1	1	23	345	368	345	368	0.97
5	15	2.1e-05	0.0013	18.3	2.0	1	23	394	416	394	416	0.98
6	15	1.2	75	3.3	0.0	1	23	431	453	431	453	0.86
7	15	0.37	23	4.9	0.4	2	23	460	482	460	482	0.94
8	15	0.0028	0.17	11.6	3.0	2	19	490	507	490	511	0.95
9	15	0.00014	0.0084	15.7	3.5	3	23	519	539	517	539	0.97
10	15	0.0098	0.61	9.9	0.1	3	23	546	566	545	566	0.97
11	15	5.7e-06	0.00035	20.1	0.4	1	23	575	597	575	597	0.98
12	15	0.0025	0.15	11.8	0.2	3	23	605	625	603	625	0.97
13	15	0.0022	0.14	11.9	0.2	3	23	633	653	631	654	0.94
14	15	0.24	15	5.5	0.0	1	23	668	690	668	690	0.93
15	15	0.0017	0.11	12.3	0.0	1	20	1065	1084	1065	1087	0.94

Sequence Information

Coding Sequence: ATGGATGTTGCTGGAGATTTAACACTACAATGGGTGGAGGAGGTAGGGAATGTTATTCACGAAGAGGTAATATGTGGTTTAGAGACACAGCTTGTTGGAGCAGAAGAAGAAGTGATAGGAGCTTGTGAAGAAGTTGCAATAGAGGAAACAGTAGAATCAGTTCCCAATGTTACTCCTACGACAGAATCAGAAATACTAATGGTACCACAGTCCAACGATATGGAATCTATTTACATAGTTCCACAAGATCAAGGTCATGACTATTTAAACATACAGGTTACAGAAGAAGTAATTGCAGATAATTGGGATAGATCTGGTCCAGAAGATGgagTTGAAATATCAGAAACAAAAGTGTCTCACGAAAATTTACTGGAATATGATGATATGGAAATACCATTACCAATTGATCAAGATTCATATACAAATAGCAGACCTTATCCATGTGATTTTTGTAGTAGAAGGTTcagaaaaaaagcaaatttaaTGAATCATATGGTGACACATCAAACAGATCGACCTCATGGTTGTAATTTATGTGGAGCACGTTATGCAAGAAAATGTGATTTAATGAATCATTTAAAGATTCATGCTTATGCACCACCAAGAGATGGTTTAGAAGATGATTTAAATGATGATGATTCATTGGCACCAGAGGAAGAAGAATCTACTAAAGGCAGACGTAAAAAGGTACAATCAAGTATACCaagaaaacgtaaaaataattcaatttcaaaacgcatggaagataataaaatggaaatgggCAAGTACGTCAATAAATCTTATGATTATGTTGACGAAGATATGCGTCTTTTGGAGGAAATGACTAGTAGAAATTCTGCGCGCAGTGGTAACTATGCTTCGAGCTCAAGATGGTCTGAACAAATGTCACCTGTATCAACTGATCCCCAAGCACCACGATGGCCTATAACTGATCCAACAAAACCATATGTTTGTCAGTATTGTGGTGTTGGTTTTGCAAGGGAAAAAGCACTTGCATCTCATGCACGTGTACATGGTGGTGACAGTCCATTTGAATGTACATCATGTGGTGATATGTTTTGGGATGTTAACAGTTTAAGAGAACATATTCGTATTAAACATGGTGGCACGGTACAATCTGATACAGAAGACTATGATAATGATGCCACTTATACAGGAGATGAAAGATTTGgggaattttattgtaatacttGTGGTGTTCCATTCCATCGTTTGGATTTACTTAAACGTCATCAGAAGATTCATGTCAAACAAGAAGCTGATATAGTGGAAGGCCCAAGTCAACATCATGTCTGTAATGTTTGTGGTGAATGGTTCGAAGAAGCTTTAGCATTATTAGCACATGCTGAACTTCATGCTAGATCACCCAGTCGTCGATGTTTGTTATGTGGAGAAAGATGTCGTGATGATGCAGAAGTTGCTGAACATGTTCGGCAAAATCATGCTGAAGATGCTCCACCAAACACATGTACCCTTTGTGGAAAAACCTGTAAAGATAAACGCAGCTTATTAAAGCATTCGTGGGTTCATAATGTTGATAAAACTTTTGGATGTACAAAATGTGGCAAACGTTTTCACAGCAAAGCTAGATTACGAAGACATATGGTATCGCATCGCAATAAAATGGTAGCTTGTGATGAATGCGGAGAAGAATTTCCTGATGGTAGAGCTCTTGTTAGCCATCGACATTCACATAATAAAGATCTAGGCGGTCGTTCTTTCCCGTGTCGAGAATGTGGGAAAACATTCGGCAGCCGTAGTTCTCAACAAATTCATATTCGTATTCATACTGGAGAAAGACCATATGGTTGTAGATTTTGTTGGAAAGCATTTGCTGATGGTGGTACTTTAAGAAAACACGAACGTATCCATACAGGAGAAAAGCCATACGGATGCGCGATTTGCCCACGTGCGTTTAATCAAAGAGTTGTTCTTAGAGAACATGTTCGTGCTCATCATTCAGGCCCTGATCCAAAATGTGTAGGTAGTATTACACCATACTTATGTAAAGTGTGTGGTGATGCATATGCAACATCGGAAGAAATAGTTGCTCATATTGTGCAACATTGTGATGATAATACTGCATTAAGACGTCAACCACAAACTGGACCACGTAAATATAAGAGAAGACGTAAACTGAAAACCCATGAAACCAATACAATGCTTCGTATGACTGAGCAGTATGATATGACGGAAGGAGGTTCTGATTCAGATgataatacaaaaagaaaacttggaagaaaaaataagcAACATCGATCAAATGTTGAAGAAGGTTATCAGAATGTTTTGAAAAGTTTTGAAAActcattacaaaatataaattctatcgTCAGTAACTCAAAATTAAATCCAGGAAAATCGAagctttctaaaaaaaagcttaggaaagaagaaaaaaaaggtgaaGCTGAAGCTTCATGTCAACCTGGTAGACCAAAAATGATTCACACCCAAAAAACAAGAGTGCCTGTAGAAATTGGTAGTGACGGAGTTAAAAAGGGACAGAAAACTAAAACAATGGTAACAAGGACTCCTAAAATGATGCCACAAGAACACAAGCTAGGTATTTTTCCGGgtggagaaagaaacagaccAAGAACAAAAAACGTTAGTTATCACATTGAAGGGAAACTTCAACCAACGCCTGCAACATTCCCAAAACCAAAGGAAGAACCTTTATTATCTCCAGCACCGATACACCATCAAACATTAACCAACATAAAAATAGAACCTAATATGCAGAAAAcatcaaataataatcacaaaaataataatggcaATATTCttactattaataatgaaaagatgGAATCAGCACCTAGAAAAAAATCAGGTGtcttgagaaaaattaaaaaacagaaagatgGAATTAAGCAAGAACCAATGGATATTGACCACGAGCAAAtacaaaacaataataatacagaaaatatgGATTCGGAAAGATTAATGGATCACTCAGTGGATGGAAGTAATTTGGAAGTTGCATTTGAAGCAAGTGTTACAaccgaagaagaaaatatacttCCTGATGTAGGTGAAGTCAATAATACTGAAAATGTGGGAACTGGAAATGTAAAACTTAGTGTAAAAGTTGAATCGACACCTCAACGAATGTTGGCTGTTCATAGCGTTATAGCACCTGTGGATGATATTCCAGAAACTATTATACCAGATGCTGTGGAATATACATGCGAAATGTGTTCCGCAGTATTTTCCAGCCGAGCAGAATTGTTGGTCCATGTTCCAATAcacatttga
Protein Sequence: MDVAGDLTLQWVEEVGNVIHEEVICGLETQLVGAEEEVIGACEEVAIEETVESVPNVTPTTESEILMVPQSNDMESIYIVPQDQGHDYLNIQVTEEVIADNWDRSGPEDGVEISETKVSHENLLEYDDMEIPLPIDQDSYTNSRPYPCDFCSRRFRKKANLMNHMVTHQTDRPHGCNLCGARYARKCDLMNHLKIHAYAPPRDGLEDDLNDDDSLAPEEEESTKGRRKKVQSSIPRKRKNNSISKRMEDNKMEMGKYVNKSYDYVDEDMRLLEEMTSRNSARSGNYASSSRWSEQMSPVSTDPQAPRWPITDPTKPYVCQYCGVGFAREKALASHARVHGGDSPFECTSCGDMFWDVNSLREHIRIKHGGTVQSDTEDYDNDATYTGDERFGEFYCNTCGVPFHRLDLLKRHQKIHVKQEADIVEGPSQHHVCNVCGEWFEEALALLAHAELHARSPSRRCLLCGERCRDDAEVAEHVRQNHAEDAPPNTCTLCGKTCKDKRSLLKHSWVHNVDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKDLGGRSFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCVGSITPYLCKVCGDAYATSEEIVAHIVQHCDDNTALRRQPQTGPRKYKRRRKLKTHETNTMLRMTEQYDMTEGGSDSDDNTKRKLGRKNKQHRSNVEEGYQNVLKSFENSLQNINSIVSNSKLNPGKSKLSKKKLRKEEKKGEAEASCQPGRPKMIHTQKTRVPVEIGSDGVKKGQKTKTMVTRTPKMMPQEHKLGIFPGGERNRPRTKNVSYHIEGKLQPTPATFPKPKEEPLLSPAPIHHQTLTNIKIEPNMQKTSNNNHKNNNGNILTINNEKMESAPRKKSGVLRKIKKQKDGIKQEPMDIDHEQIQNNNNTENMDSERLMDHSVDGSNLEVAFEASVTTEEENILPDVGEVNNTENVGTGNVKLSVKVESTPQRMLAVHSVIAPVDDIPETIIPDAVEYTCEMCSAVFSSRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01424531;
90% Identity: iTF_01420417;
80% Identity: -