Fvar003338.1
Basic Information
- Insect
- Frieseomelitta varia
- Gene Symbol
- SMARCC2
- Assembly
- GCA_011392965.1
- Location
- WNWW01000816.1:1008392-1012424[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.5e-15 5.6e-12 44.8 0.2 3 44 645 686 643 688 0.95
Sequence Information
- Coding Sequence
- atgaatattcagTTAAGAATGCTCGCGTTAGGACCTAAAAAAGACGGTGGACCcaatacgaaattttttgaGTCCCAGGAGATCCTCACACAATTAGATGGAATTAAACAATGGCTGTTGAAAACCTGCAAAAAGtatgtCCAAACGGATCCTCCCACAAATAAAAGTTTAGCTACGTTGGTAGtacaattattgcaatttcaagAAGATAATTTAGGGAAGAATGTTTCGAAACCTCCAATGACAAGACTTCCTATGAAATGTTTCTTAGATTTTAAACCTGGTGGTGGCTTATGTCATATTCTTGCTACAGCATATCGTTTTAAACAAGAACAAGGATGGCGTCGATTTGATTTCCCTGTTGGAAAATCAGGATCTCGTATGGACAGAACAGTAGAAATGTTAATGGCAGCTGAACGAGCTTTGGTACAGAATCGTTGTATGATTATACCAAATGTATATGTTAGACCTGATGTAGATAAATCAACAGctgcaaaagtaaaagaagcAGTTCGGCGACATCAAGGTAGtattgttgaaaatgaaacagatgCAACACACATAATTTACCCTCCAGTTGATCCTATGGAAGAAGAGTATGCACGACCTTGTATGAGACGAGAAAGATCTGTCCTTCTTCATTGGTATTATTTCCCGGATAGTTATGATTCTTGGACTACATTAGATCTACCCTGGGACTTTCCAGAAGGTACacttacaaatacaaatatgaaatCGGTATACAAAGTATCGGCAACGTGGGCGTTAGACTTAGATCAATATAACGAATGGATGAACGAAGAAGACTACGAAATAGATGAGAACGgtcaaaagaaaatacataaataccgACTTTCGGTAGAAGATTTAATGGCTCAGCCGTCTCATCCTCCACCTTCAGCaaaaaaaccaaaaagaaaacgatctCCTAGTCCGTCACCGAAACCAGGAAAACGTAAAAGCGCGAGAGCACCATCAGGTGTTCAAAGTACTTCATCTTCGTCATCACTTACGACTCCAAAAAAATCACGTGGCGGAGGAGAAGAGGAAGATGATCTCACTCAAGGAATGGAAGATCCACCGGCGGAACCTCGGATCGTAGAAGTAGTTGCTACTCCTACGAATCCTCCTGTTACTGGTCAAGGTAACATTCCAACAAGTGGCTCTACTTTGACCACAACAGGCAGTAAAAAACAAGATAACGAACTTCAACCGCTCAAATCTGGTAATATGGCAGATTTGGATGAACCTATGGAAGGGGATAAGGGAAGTTCTCAAAGCACTCAAGATAGGGAGGAACGAGACGCAAgcaaagaaagaggagaagggaATAAAGGAGACGAACCGGAAGATAATGTTACTGAGCAAACGCATCATATTGTTGTTCCTAGTTACTCAGCTTGGTTTGATTACAATTCGATTCATACCATAGAAAAGAGAGCTTTATCCGAATTTTTtaatggtaaaaataaatctaaaacaCCGGAAATTTATCTCGCatacagaaattttatgatCGACACCTACAGATTAAATCCTACGGAATATATTACATCGACTGCTTGTAGACGTAACTTAGCAGGTGATGTCTGTGCAATTATGCGTGTACATGCGTTTTTGGAACAATGGGGACTTATTAACTACCAAGTGGATGCAGAATCAAGACCGACACCTATGGGACCACCTCCGACATCACATTTCCATGTGTTGTCAGATACTCCGTCAGGTTTGGCCCCAGTTAATCCAAATCCTCCAAAAACACCACAGCCTTCTGCCGCGAAAACATTGCTCGATTTAGAGAAAAAATCATCTAGCCTAGCAACAGAGGAGAAAGCTACGGCCGGGGTGATGGCAAACTTTggattaaaaatcgatcagTATTCGAGAAAACCAGCGGttttgaaaaacaaacaaGCTGCTGGTGCTACTCGTGATTGGACAGAACAAGAAACGCTTTTACTGTTAGAAGGACTAGAATTACACAAAGATGATTGGAATAAAGTTTGCGAACATGTTGGTTCGAGAACGCAAGATGAATGTATCTTACATTTCTTGCGGCTTCCCATAGAAGATCCATATTTAGAAGAAGGCGGTCCAGAAGGTTTAGGTCCATTAGCTTATCAACCAGTACCATTTTCTAAAGCTGGCAATCCAGTTATGAGTACTGTGGCATTTTTGGCCTCGGTCGTTGATCCTAGAGTTGCTGCAAGTGCAGCCAAAGCTGCTATGGAAGAATTTGCGGCCATTAAGGATCAAGTACCAGCAGCCTTATTGGACCAACACTTGAGAAATGTTCAAGCTAGTGCCAATTCTGATGGCAAATTTGATCCAGCCGCGGGGCTAGCACAATCGGGTATAGCTGGGACAGGACCACCCGAACCTCCAGATGATACACCAGCTTCAACTACTGGAAACGTACCAACAACAGTGGCTACATCTCCACATTCGGCAACAACAGCTTctatagaaatgaaaaaagaggaacaagAAAAACCTAAAGAATCTGAGATTGACCAAAGTCAATTAGATAtaacaaagaaagaagatgaaCTAAAAGAAACCGAAGAAGATACAAAATCAACTGTGGATGCTGAGTCTATggaagcgaaagaaaagaaagataagGTGGTACGAGACGCTCAACTGCAGTCTGCAGCTGCAGCAGCATTAGCGGCAGCTGCTGTTAAAGCAAAGCATTTGGCAGCTGTAGAAGaacgtaaaattaaatctttagtGGCATTGCTCGTTGAAacgcaaatgaaaaaattggaaattaaattacgtcaCTTTGAAGAACTGGAAACTACAATGGAACGAGAACGTGAAGGTCTTGAATATCAGCGACAACAACTCATTACAGAAAGACAACAGTTTCATTTGGAACAGTTGAAAGCTGCGGAATTTAGAGCTAGACAACAGGCACTTGGGCGTTTAGCTCAagagcagcagcaacagcaacaaaaTCAACATCCTACATGGCAACCTGCTgcacaacaacaacagcaacaacaaccgCCAAGTCCACAACCACCAGGTCAACAACCACCATCGCACACACCTCCCCaacaaacataa
- Protein Sequence
- MNIQLRMLALGPKKDGGPNTKFFESQEILTQLDGIKQWLLKTCKKYVQTDPPTNKSLATLVVQLLQFQEDNLGKNVSKPPMTRLPMKCFLDFKPGGGLCHILATAYRFKQEQGWRRFDFPVGKSGSRMDRTVEMLMAAERALVQNRCMIIPNVYVRPDVDKSTAAKVKEAVRRHQGSIVENETDATHIIYPPVDPMEEEYARPCMRRERSVLLHWYYFPDSYDSWTTLDLPWDFPEGTLTNTNMKSVYKVSATWALDLDQYNEWMNEEDYEIDENGQKKIHKYRLSVEDLMAQPSHPPPSAKKPKRKRSPSPSPKPGKRKSARAPSGVQSTSSSSSLTTPKKSRGGGEEEDDLTQGMEDPPAEPRIVEVVATPTNPPVTGQGNIPTSGSTLTTTGSKKQDNELQPLKSGNMADLDEPMEGDKGSSQSTQDREERDASKERGEGNKGDEPEDNVTEQTHHIVVPSYSAWFDYNSIHTIEKRALSEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLSDTPSGLAPVNPNPPKTPQPSAAKTLLDLEKKSSSLATEEKATAGVMANFGLKIDQYSRKPAVLKNKQAAGATRDWTEQETLLLLEGLELHKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEEGGPEGLGPLAYQPVPFSKAGNPVMSTVAFLASVVDPRVAASAAKAAMEEFAAIKDQVPAALLDQHLRNVQASANSDGKFDPAAGLAQSGIAGTGPPEPPDDTPASTTGNVPTTVATSPHSATTASIEMKKEEQEKPKESEIDQSQLDITKKEDELKETEEDTKSTVDAESMEAKEKKDKVVRDAQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQALGRLAQEQQQQQQNQHPTWQPAAQQQQQQQPPSPQPPGQQPPSHTPPQQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01473111;
- 90% Identity
- iTF_00873729;
- 80% Identity
- -